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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.054] [SVM Score: 0.874749870062]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

S phase 2.2737E-6 2 10 2 6292
S phase of mitotic cell cycle 2.2737E-6 2 10 2 6292
G2/M transition of mitotic cell cycle 2.0514E-5 2 29 2 6292
G1/S transition of mitotic cell cycle 6.1895E-5 2 50 2 6292
regulation of cell cycle process 1.6371E-4 2 81 2 6292
interphase of mitotic cell cycle 2.3525E-4 2 97 2 6292
interphase 2.3525E-4 2 97 2 6292
spindle assembly 3.1786E-4 2 1 1 6292
regulation of cell cycle 4.3024E-4 2 131 2 6292
positive regulation of DNA replication 6.3568E-4 2 2 1 6292
phosphorylation 8.0494E-4 2 179 2 6292
regulation of S phase 9.5344E-4 2 3 1 6292
regulation of S phase of mitotic cell cycle 9.5344E-4 2 3 1 6292
positive regulation of DNA metabolic process 9.5344E-4 2 3 1 6292
phosphorus metabolic process 1.3191E-3 2 229 2 6292
phosphate metabolic process 1.3191E-3 2 229 2 6292
premeiotic DNA synthesis 1.5888E-3 2 5 1 6292
mitotic cell cycle 1.6363E-3 2 255 2 6292
M phase 2.1762E-3 2 294 2 6292
cell cycle phase 3.5621E-3 2 376 2 6292
regulation of cyclin-dependent protein kinase activity 4.4455E-3 2 14 1 6292
regulation of DNA replication 4.7627E-3 2 15 1 6292
cell cycle process 6.0534E-3 2 490 2 6292
cell cycle 6.95E-3 2 525 2 6292
regulation of meiotic cell cycle 6.9813E-3 2 22 1 6292
regulation of meiosis 6.9813E-3 2 22 1 6292
regulation of kinase activity 8.248E-3 2 26 1 6292
regulation of protein kinase activity 8.248E-3 2 26 1 6292
regulation of transferase activity 8.248E-3 2 26 1 6292
regulation of DNA metabolic process 9.8303E-3 2 31 1 6292
regulation of phosphorylation 9.8303E-3 2 31 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

cyclin-dependent protein kinase activity 2.5415E-3 2 8 1 6292
cyclin-dependent protein kinase regulator activity 8.248E-3 2 26 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle