From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.038] [SVM Score: 0.88759282152] |
Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
sulfur amino acid metabolic process | 2.8346E-5 | 2 | 34 | 2 | 6292 |
sulfur metabolic process | 2.0236E-4 | 2 | 90 | 2 | 6292 |
regulation of sulfur metabolic process | 3.1786E-4 | 2 | 1 | 1 | 6292 |
cellular amino acid metabolic process | 9.9543E-4 | 2 | 199 | 2 | 6292 |
cellular amine metabolic process | 1.2395E-3 | 2 | 222 | 2 | 6292 |
amine metabolic process | 1.4856E-3 | 2 | 243 | 2 | 6292 |
cellular amino acid and derivative metabolic process | 1.4856E-3 | 2 | 243 | 2 | 6292 |
organic acid metabolic process | 2.793E-3 | 2 | 333 | 2 | 6292 |
oxoacid metabolic process | 2.793E-3 | 2 | 333 | 2 | 6292 |
carboxylic acid metabolic process | 2.793E-3 | 2 | 333 | 2 | 6292 |
cellular ketone metabolic process | 3.0157E-3 | 2 | 346 | 2 | 6292 |
sulfur amino acid biosynthetic process | 4.4455E-3 | 2 | 14 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
specific RNA polymerase II transcription factor activity | 6.1895E-5 | 2 | 50 | 2 | 6292 |
RNA polymerase II transcription factor activity | 4.2367E-4 | 2 | 130 | 2 | 6292 |
DNA binding | 1.6492E-3 | 2 | 256 | 2 | 6292 |
transcription regulator activity | 2.8947E-3 | 2 | 339 | 2 | 6292 |