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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.914875662127]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

90S preribosome 5.3968E-3 2 17 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

regulation of translation 8.0641E-5 2 57 2 6292
posttranscriptional regulation of gene expression 9.2464E-5 2 61 2 6292
regulation of cellular protein metabolic process 1.151E-4 2 68 2 6292
regulation of protein metabolic process 1.3647E-4 2 74 2 6292
negative regulation of mRNA processing 3.1786E-4 2 1 1 6292
negative regulation of nuclear mRNA splicing, via spliceosome 3.1786E-4 2 1 1 6292
negative regulation of RNA splicing 3.1786E-4 2 1 1 6292
rRNA processing 4.1068E-4 2 128 2 6292
rRNA metabolic process 4.7071E-4 2 137 2 6292
regulation of mRNA processing 6.3568E-4 2 2 1 6292
regulation of RNA splicing 6.3568E-4 2 2 1 6292
regulation of nuclear mRNA splicing, via spliceosome 6.3568E-4 2 2 1 6292
ncRNA processing 1.1624E-3 2 215 2 6292
ncRNA metabolic process 1.6621E-3 2 257 2 6292
negative regulation of translation 2.224E-3 2 7 1 6292
ribosome biogenesis 3.0157E-3 2 346 2 6292
ribonucleoprotein complex biogenesis 3.5243E-3 2 374 2 6292
translation 3.5621E-3 2 376 2 6292
RNA processing 3.6384E-3 2 380 2 6292
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 4.1283E-3 2 13 1 6292
ribosomal small subunit assembly 4.4455E-3 2 14 1 6292
negative regulation of cellular protein metabolic process 4.7627E-3 2 15 1 6292
regulation of gene expression 4.9915E-3 2 445 2 6292
negative regulation of protein metabolic process 5.0798E-3 2 16 1 6292
regulation of macromolecule biosynthetic process 5.2416E-3 2 456 2 6292
regulation of cellular biosynthetic process 5.6164E-3 2 472 2 6292
regulation of biosynthetic process 5.6402E-3 2 473 2 6292
regulation of macromolecule metabolic process 6.004E-3 2 488 2 6292
regulation of primary metabolic process 6.6615E-3 2 514 2 6292
regulation of cellular metabolic process 7.2445E-3 2 536 2 6292
regulation of metabolic process 7.5452E-3 2 547 2 6292
ribosomal small subunit biogenesis 8.248E-3 2 26 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

structural constituent of ribosome 1.1301E-3 2 212 2 6292
structural molecule activity 2.8947E-3 2 339 2 6292
rRNA binding 5.0798E-3 2 16 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle