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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.963879347463]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

mating projection tip 3.0063E-5 2 35 2 6292
cell projection part 4.3504E-5 2 42 2 6292
cell projection 5.9419E-5 2 49 2 6292
mating projection 5.9419E-5 2 49 2 6292
site of polarized growth 7.0879E-4 2 168 2 6292
plasma membrane 1.8077E-3 2 268 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

pseudohyphal growth 1.151E-4 2 68 2 6292
cell growth 1.7194E-4 2 83 2 6292
filamentous growth of a population of unicellular organisms 2.0236E-4 2 90 2 6292
growth of unicellular organism as a thread of attached cells 2.0236E-4 2 90 2 6292
filamentous growth 2.8118E-4 2 106 2 6292
regulation of cell size 3.0847E-4 2 111 2 6292
regulation of anatomical structure size 3.2544E-4 2 114 2 6292
regulation of cellular component size 3.2544E-4 2 114 2 6292
growth 5.275E-4 2 145 2 6292
signaling pathway 8.5067E-4 2 184 2 6292
osmosensory signaling pathway via Sho1 osmosensor 9.5344E-4 2 3 1 6292
regulation of initiation of mating projection growth 1.2712E-3 2 4 1 6292
signaling 1.598E-3 2 252 2 6292
regulation of cell projection organization 2.224E-3 2 7 1 6292
regulation of cell projection assembly 2.224E-3 2 7 1 6292
regulation of mating projection assembly 2.224E-3 2 7 1 6292
budding cell isotropic bud growth 2.5415E-3 2 8 1 6292
regulation of cell morphogenesis 2.859E-3 2 9 1 6292
budding cell apical bud growth 3.1764E-3 2 10 1 6292
mating projection assembly 3.1764E-3 2 10 1 6292
regulation of response to stimulus 3.1764E-3 2 10 1 6292
cell projection assembly 3.4937E-3 2 11 1 6292
cell projection organization 3.4937E-3 2 11 1 6292
regulation of developmental process 3.4937E-3 2 11 1 6292
regulation of anatomical structure morphogenesis 3.4937E-3 2 11 1 6292
cellular response to stimulus 3.6193E-3 2 379 2 6292
regulation of cellular component biogenesis 5.7138E-3 2 18 1 6292
Rho protein signal transduction 6.3477E-3 2 20 1 6292
osmosensory signaling pathway 6.6645E-3 2 21 1 6292
cellular response to abiotic stimulus 6.9813E-3 2 22 1 6292
cell morphogenesis involved in conjugation with cellular fusion 6.9813E-3 2 22 1 6292
cellular response to osmotic stress 6.9813E-3 2 22 1 6292
cell morphogenesis involved in conjugation 7.6148E-3 2 24 1 6292
regulation of biological quality 7.6561E-3 2 551 2 6292
regulation of exit from mitosis 7.9314E-3 2 25 1 6292
exit from mitosis 7.9314E-3 2 25 1 6292
regulation of conjugation with cellular fusion by signal transduction 8.5646E-3 2 27 1 6292
pheromone-dependent signal transduction involved in conjugation with cellular fusion 8.5646E-3 2 27 1 6292
G-protein coupled receptor protein signaling pathway 9.8303E-3 2 31 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

molecular transducer activity 1.5966E-4 2 80 2 6292
signal transducer activity 1.5966E-4 2 80 2 6292
osmosensor activity 9.5344E-4 2 3 1 6292
transmembrane receptor activity 3.4937E-3 2 11 1 6292
receptor activity 4.4455E-3 2 14 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle