From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.970364664289] |
Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
actin cytoskeleton | 1.8038E-4 | 2 | 85 | 2 | 6292 |
cell cortex part | 2.304E-4 | 2 | 96 | 2 | 6292 |
cell cortex | 2.974E-4 | 2 | 109 | 2 | 6292 |
myosin II complex | 3.1786E-4 | 2 | 1 | 1 | 6292 |
myosin complex | 9.5344E-4 | 2 | 3 | 1 | 6292 |
cytoskeletal part | 1.0156E-3 | 2 | 201 | 2 | 6292 |
cytoskeleton | 1.1732E-3 | 2 | 216 | 2 | 6292 |
cellular bud neck contractile ring | 5.7138E-3 | 2 | 18 | 1 | 6292 |
actomyosin contractile ring | 5.7138E-3 | 2 | 18 | 1 | 6292 |
contractile ring | 5.7138E-3 | 2 | 18 | 1 | 6292 |
cell division site | 8.5646E-3 | 2 | 27 | 1 | 6292 |
cell division site part | 8.5646E-3 | 2 | 27 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
cell cycle cytokinesis | 1.5966E-4 | 2 | 80 | 2 | 6292 |
cytokinetic process | 2.1151E-4 | 2 | 92 | 2 | 6292 |
cytokinesis | 3.1407E-4 | 2 | 112 | 2 | 6292 |
cell division | 5.275E-4 | 2 | 145 | 2 | 6292 |
actomyosin structure organization | 9.5344E-4 | 2 | 3 | 1 | 6292 |
cytokinesis, actomyosin contractile ring assembly | 9.5344E-4 | 2 | 3 | 1 | 6292 |
assembly of actomyosin apparatus involved in cell cycle cytokinesis | 9.5344E-4 | 2 | 3 | 1 | 6292 |
contractile ring contraction involved in cell cycle cytokinesis | 1.2712E-3 | 2 | 4 | 1 | 6292 |
cytokinesis, completion of separation | 2.224E-3 | 2 | 7 | 1 | 6292 |
cytokinetic cell separation | 2.859E-3 | 2 | 9 | 1 | 6292 |
response to salt stress | 4.4455E-3 | 2 | 14 | 1 | 6292 |
cell cycle process | 6.0534E-3 | 2 | 490 | 2 | 6292 |
cell cycle | 6.95E-3 | 2 | 525 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
microfilament motor activity | 5.0527E-7 | 2 | 5 | 2 | 6292 |
motor activity | 7.7306E-6 | 2 | 18 | 2 | 6292 |
nucleoside-triphosphatase activity | 2.7262E-3 | 2 | 329 | 2 | 6292 |
hydrolase activity, acting on acid anhydrides | 3.1391E-3 | 2 | 353 | 2 | 6292 |
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 3.1391E-3 | 2 | 353 | 2 | 6292 |
pyrophosphatase activity | 3.1391E-3 | 2 | 353 | 2 | 6292 |