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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.970364664289]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

actin cytoskeleton 1.8038E-4 2 85 2 6292
cell cortex part 2.304E-4 2 96 2 6292
cell cortex 2.974E-4 2 109 2 6292
myosin II complex 3.1786E-4 2 1 1 6292
myosin complex 9.5344E-4 2 3 1 6292
cytoskeletal part 1.0156E-3 2 201 2 6292
cytoskeleton 1.1732E-3 2 216 2 6292
cellular bud neck contractile ring 5.7138E-3 2 18 1 6292
actomyosin contractile ring 5.7138E-3 2 18 1 6292
contractile ring 5.7138E-3 2 18 1 6292
cell division site 8.5646E-3 2 27 1 6292
cell division site part 8.5646E-3 2 27 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

cell cycle cytokinesis 1.5966E-4 2 80 2 6292
cytokinetic process 2.1151E-4 2 92 2 6292
cytokinesis 3.1407E-4 2 112 2 6292
cell division 5.275E-4 2 145 2 6292
actomyosin structure organization 9.5344E-4 2 3 1 6292
cytokinesis, actomyosin contractile ring assembly 9.5344E-4 2 3 1 6292
assembly of actomyosin apparatus involved in cell cycle cytokinesis 9.5344E-4 2 3 1 6292
contractile ring contraction involved in cell cycle cytokinesis 1.2712E-3 2 4 1 6292
cytokinesis, completion of separation 2.224E-3 2 7 1 6292
cytokinetic cell separation 2.859E-3 2 9 1 6292
response to salt stress 4.4455E-3 2 14 1 6292
cell cycle process 6.0534E-3 2 490 2 6292
cell cycle 6.95E-3 2 525 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

microfilament motor activity 5.0527E-7 2 5 2 6292
motor activity 7.7306E-6 2 18 2 6292
nucleoside-triphosphatase activity 2.7262E-3 2 329 2 6292
hydrolase activity, acting on acid anhydrides 3.1391E-3 2 353 2 6292
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 3.1391E-3 2 353 2 6292
pyrophosphatase activity 3.1391E-3 2 353 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle