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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.971732071386]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

cytosolic large ribosomal subunit 8.9432E-5 2 60 2 6292
cytosolic ribosome 2.5516E-4 2 101 2 6292
large ribosomal subunit 3.0291E-4 2 110 2 6292
cytosolic part 3.7294E-4 2 122 2 6292
ribosomal subunit 8.4142E-4 2 183 2 6292
cytosol 2.0305E-3 2 284 2 6292
ribosome 2.1173E-3 2 290 2 6292
ribonucleoprotein complex 6.6615E-3 2 514 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

anatomical structure homeostasis 2.0592E-3 2 286 2 6292
telomere organization 2.0592E-3 2 286 2 6292
telomere maintenance 2.0592E-3 2 286 2 6292
translation 3.5621E-3 2 376 2 6292
homeostatic process 4.1951E-3 2 408 2 6292
regulation of biological quality 7.6561E-3 2 551 2 6292
chromosome organization 7.7677E-3 2 555 2 6292
DNA metabolic process 8.631E-3 2 585 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

structural constituent of ribosome 1.1301E-3 2 212 2 6292
structural molecule activity 2.8947E-3 2 339 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle