From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.03614217699] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
AGA2 |
|
|
|
SAG1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
fungal-type cell wall | 2.7588E-4 | 2 | 105 | 2 | 6292 |
cell wall | 2.8118E-4 | 2 | 106 | 2 | 6292 |
external encapsulating structure | 2.8118E-4 | 2 | 106 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
heterophilic cell-cell adhesion | 3.0316E-7 | 2 | 4 | 2 | 6292 |
agglutination involved in conjugation with cellular fusion | 3.0316E-7 | 2 | 4 | 2 | 6292 |
agglutination involved in conjugation | 3.0316E-7 | 2 | 4 | 2 | 6292 |
cell-cell adhesion | 5.0527E-7 | 2 | 5 | 2 | 6292 |
cell adhesion | 1.4147E-6 | 2 | 8 | 2 | 6292 |
biological adhesion | 1.4147E-6 | 2 | 8 | 2 | 6292 |
response to pheromone involved in conjugation with cellular fusion | 1.44E-4 | 2 | 76 | 2 | 6292 |
response to pheromone | 2.3525E-4 | 2 | 97 | 2 | 6292 |
cellular response to chemical stimulus | 2.8654E-4 | 2 | 107 | 2 | 6292 |
conjugation with cellular fusion | 3.9158E-4 | 2 | 125 | 2 | 6292 |
conjugation | 3.979E-4 | 2 | 126 | 2 | 6292 |
response to organic substance | 4.7071E-4 | 2 | 137 | 2 | 6292 |
multi-organism process | 5.13E-4 | 2 | 143 | 2 | 6292 |
reproductive cellular process | 1.1194E-3 | 2 | 211 | 2 | 6292 |
reproductive process | 1.1301E-3 | 2 | 212 | 2 | 6292 |
sexual reproduction | 1.3656E-3 | 2 | 233 | 2 | 6292 |
reproduction | 2.7096E-3 | 2 | 328 | 2 | 6292 |
cellular response to stimulus | 3.6193E-3 | 2 | 379 | 2 | 6292 |
response to chemical stimulus | 3.6769E-3 | 2 | 382 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
cell adhesion molecule binding | 1.5158E-7 | 2 | 3 | 2 | 6292 |
protein binding | 9.4468E-3 | 2 | 612 | 2 | 6292 |