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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.04705751675]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
FKS1
  • mitochondrion
  • 1,3-beta-glucan synthase complex
  • actin cortical patch
  • actin cap
    		•
  • 1,3-beta-glucan biosynthetic process
  • regulation of cell size
  • cellular cell wall organization
  • endocytosis
    		•
  • 1,3-beta-glucan synthase activity
    		•
    GSC2
  • prospore membrane
  • 1,3-beta-glucan synthase complex
  • actin cap
    		•
  • 1,3-beta-glucan biosynthetic process
  • cellular cell wall organization
  • ascospore wall assembly
    		•
  • 1,3-beta-glucan synthase activity
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    1,3-beta-glucan synthase complex 1.5158E-7 2 3 2 6292
    actin cap 3.3348E-6 2 12 2 6292
    cortical actin cytoskeleton 6.6999E-5 2 52 2 6292
    cortical cytoskeleton 6.6999E-5 2 52 2 6292
    plasma membrane part 8.0641E-5 2 57 2 6292
    actin cytoskeleton 1.8038E-4 2 85 2 6292
    cell cortex part 2.304E-4 2 96 2 6292
    cell cortex 2.974E-4 2 109 2 6292
    cytoskeletal part 1.0156E-3 2 201 2 6292
    cytoskeleton 1.1732E-3 2 216 2 6292
    plasma membrane 1.8077E-3 2 268 2 6292
    prospore membrane 6.0308E-3 2 19 1 6292
    intracellular immature spore 6.0308E-3 2 19 1 6292
    ascospore-type prospore 6.0308E-3 2 19 1 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    1,3-beta-glucan biosynthetic process 3.0316E-7 2 4 2 6292
    1,3-beta-glucan metabolic process 3.0316E-7 2 4 2 6292
    beta-glucan biosynthetic process 1.4147E-6 2 8 2 6292
    beta-glucan metabolic process 1.819E-6 2 9 2 6292
    glucan biosynthetic process 1.2783E-5 2 23 2 6292
    cellular polysaccharide biosynthetic process 2.5061E-5 2 32 2 6292
    polysaccharide biosynthetic process 3.0063E-5 2 35 2 6292
    glucan metabolic process 4.5626E-5 2 43 2 6292
    cellular glucan metabolic process 4.5626E-5 2 43 2 6292
    cellular polysaccharide metabolic process 7.5032E-5 2 55 2 6292
    polysaccharide metabolic process 8.9432E-5 2 60 2 6292
    cellular carbohydrate biosynthetic process 1.5173E-4 2 78 2 6292
    carbohydrate biosynthetic process 2.0691E-4 2 91 2 6292
    external encapsulating structure organization 7.5174E-4 2 173 2 6292
    cell wall organization 7.5174E-4 2 173 2 6292
    cellular cell wall organization 7.5174E-4 2 173 2 6292
    cellular cell wall organization or biogenesis 1.0877E-3 2 208 2 6292
    cell wall organization or biogenesis 1.0877E-3 2 208 2 6292
    cellular carbohydrate metabolic process 1.7276E-3 2 262 2 6292
    carbohydrate metabolic process 1.9877E-3 2 281 2 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    1,3-beta-glucan synthase activity 1.5158E-7 2 3 2 6292
    UDP-glucosyltransferase activity 4.5979E-6 2 14 2 6292
    glucosyltransferase activity 6.0632E-6 2 16 2 6292
    UDP-glycosyltransferase activity 1.7735E-5 2 27 2 6292
    transferase activity, transferring hexosyl groups 1.5966E-4 2 80 2 6292
    transferase activity, transferring glycosyl groups 2.7062E-4 2 104 2 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle