| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.04750310102] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| HSH155 |
|
|
|
| LUC7 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| small nuclear ribonucleoprotein complex | 9.8679E-5 | 2 | 63 | 2 | 6292 |
| U2 snRNP | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| U1 snRNP | 5.3968E-3 | 2 | 17 | 1 | 6292 |
| ribonucleoprotein complex | 6.6615E-3 | 2 | 514 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| spliceosome assembly | 7.7306E-6 | 2 | 18 | 2 | 6292 |
| ribonucleoprotein complex assembly | 2.1151E-4 | 2 | 92 | 2 | 6292 |
| nuclear mRNA splicing, via spliceosome | 2.4511E-4 | 2 | 99 | 2 | 6292 |
| RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | 2.5011E-4 | 2 | 100 | 2 | 6292 |
| RNA splicing, via transesterification reactions | 2.8654E-4 | 2 | 107 | 2 | 6292 |
| RNA splicing | 4.3685E-4 | 2 | 132 | 2 | 6292 |
| mRNA processing | 6.1087E-4 | 2 | 156 | 2 | 6292 |
| cellular macromolecular complex assembly | 8.3223E-4 | 2 | 182 | 2 | 6292 |
| mRNA metabolic process | 1.1408E-3 | 2 | 213 | 2 | 6292 |
| cellular macromolecular complex subunit organization | 1.6882E-3 | 2 | 259 | 2 | 6292 |
| mRNA splice site selection | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| macromolecular complex assembly | 1.9877E-3 | 2 | 281 | 2 | 6292 |
| macromolecular complex subunit organization | 3.2108E-3 | 2 | 357 | 2 | 6292 |
| ribonucleoprotein complex biogenesis | 3.5243E-3 | 2 | 374 | 2 | 6292 |
| RNA processing | 3.6384E-3 | 2 | 380 | 2 | 6292 |
| cellular component assembly | 3.7349E-3 | 2 | 385 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| mRNA binding | 3.0063E-5 | 2 | 35 | 2 | 6292 |
| RNA binding | 3.3934E-3 | 2 | 367 | 2 | 6292 |