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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.12706597217]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

DNA-directed RNA polymerase II, core complex 3.3348E-6 2 12 2 6292
RNA polymerase complex 2.3495E-5 2 31 2 6292
nuclear DNA-directed RNA polymerase complex 2.3495E-5 2 31 2 6292
DNA-directed RNA polymerase complex 2.3495E-5 2 31 2 6292
DNA-directed RNA polymerase II, holoenzyme 7.7811E-5 2 56 2 6292
nucleoplasm part 1.5102E-3 2 245 2 6292
nucleoplasm 1.7541E-3 2 264 2 6292
DNA-directed RNA polymerase I complex 4.4455E-3 2 14 1 6292
nuclear lumen 5.1728E-3 2 453 2 6292
DNA-directed RNA polymerase III complex 5.3968E-3 2 17 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

transcription from RNA polymerase II promoter 2.8267E-3 2 335 2 6292
transcription, DNA-dependent 6.3792E-3 2 503 2 6292
RNA biosynthetic process 6.5067E-3 2 508 2 6292
transcription 7.6839E-3 2 552 2 6292
transcription from RNA polymerase I promoter 9.5139E-3 2 30 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

RNA polymerase activity 2.8346E-5 2 34 2 6292
DNA-directed RNA polymerase activity 2.8346E-5 2 34 2 6292
nucleotidyltransferase activity 7.0879E-4 2 168 2 6292
transferase activity, transferring phosphorus-containing groups 4.4459E-3 2 420 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle