YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.18273910008]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

endoplasmic reticulum membrane 4.4352E-4 2 133 2 6292
endoplasmic reticulum part 5.6464E-4 2 150 2 6292
subsynaptic reticulum 5.6464E-4 2 150 2 6292
mitochondrial matrix 7.7811E-4 2 176 2 6292
mitochondrial lumen 7.7811E-4 2 176 2 6292
nuclear envelope 9.9543E-4 2 199 2 6292
nuclear membrane-endoplasmic reticulum network 1.3539E-3 2 232 2 6292
endoplasmic reticulum 3.3381E-3 2 364 2 6292
endomembrane system 3.9918E-3 2 398 2 6292
mitochondrial part 5.6881E-3 2 475 2 6292
envelope 6.43E-3 2 505 2 6292
organelle envelope 6.43E-3 2 505 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

phytosteroid metabolic process 1.6421E-5 2 26 2 6292
phytosteroid biosynthetic process 1.6421E-5 2 26 2 6292
ergosterol biosynthetic process 1.6421E-5 2 26 2 6292
ergosterol metabolic process 1.6421E-5 2 26 2 6292
steroid biosynthetic process 2.5061E-5 2 32 2 6292
sterol biosynthetic process 2.5061E-5 2 32 2 6292
sterol metabolic process 4.3504E-5 2 42 2 6292
steroid metabolic process 4.5626E-5 2 43 2 6292
lipid biosynthetic process 4.2367E-4 2 130 2 6292
alcohol metabolic process 1.2172E-3 2 220 2 6292
lipid metabolic process 1.4491E-3 2 240 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

hydroxymethylglutaryl-CoA reductase (NADPH) activity 5.0527E-8 2 2 2 6292
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 1.3278E-4 2 73 2 6292
oxidoreductase activity, acting on CH-OH group of donors 1.6371E-4 2 81 2 6292
oxidoreductase activity 1.9877E-3 2 281 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle