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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.23069473817]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

HIR complex 5.0527E-7 2 5 2 6292
chromatin assembly complex 3.3348E-6 2 12 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

DNA replication-independent nucleosome assembly 7.579E-7 2 6 2 6292
DNA replication-independent nucleosome organization 7.579E-7 2 6 2 6292
nucleosome assembly 6.0632E-6 2 16 2 6292
chromatin assembly 8.6401E-6 2 19 2 6292
nucleosome organization 2.0514E-5 2 29 2 6292
DNA packaging 2.5061E-5 2 32 2 6292
chromatin assembly or disassembly 3.0063E-5 2 35 2 6292
RNA elongation from RNA polymerase II promoter 3.744E-5 2 39 2 6292
protein-DNA complex assembly 3.744E-5 2 39 2 6292
RNA elongation 5.0022E-5 2 45 2 6292
DNA conformation change 8.3521E-5 2 58 2 6292
cellular macromolecular complex assembly 8.3223E-4 2 182 2 6292
chromatin organization 1.036E-3 2 203 2 6292
regulation of transcription from RNA polymerase II promoter 1.3075E-3 2 228 2 6292
cellular macromolecular complex subunit organization 1.6882E-3 2 259 2 6292
macromolecular complex assembly 1.9877E-3 2 281 2 6292
transcription from RNA polymerase II promoter 2.8267E-3 2 335 2 6292
macromolecular complex subunit organization 3.2108E-3 2 357 2 6292
regulation of transcription, DNA-dependent 3.2288E-3 2 358 2 6292
regulation of RNA metabolic process 3.3198E-3 2 363 2 6292
regulation of transcription 3.7155E-3 2 384 2 6292
cellular component assembly 3.7349E-3 2 385 2 6292
regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 4.3405E-3 2 415 2 6292
regulation of nitrogen compound metabolic process 4.3615E-3 2 416 2 6292
regulation of transcription involved in G1/S-phase of mitotic cell cycle 4.4455E-3 2 14 1 6292
regulation of gene expression 4.9915E-3 2 445 2 6292
regulation of macromolecule biosynthetic process 5.2416E-3 2 456 2 6292
regulation of cellular biosynthetic process 5.6164E-3 2 472 2 6292
regulation of biosynthetic process 5.6402E-3 2 473 2 6292
regulation of macromolecule metabolic process 6.004E-3 2 488 2 6292
transcription, DNA-dependent 6.3792E-3 2 503 2 6292
RNA biosynthetic process 6.5067E-3 2 508 2 6292
regulation of primary metabolic process 6.6615E-3 2 514 2 6292
regulation of cellular metabolic process 7.2445E-3 2 536 2 6292
regulation of metabolic process 7.5452E-3 2 547 2 6292
transcription 7.6839E-3 2 552 2 6292
chromosome organization 7.7677E-3 2 555 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

transcription corepressor activity 6.0632E-6 2 16 2 6292
transcription cofactor activity 3.9411E-5 2 40 2 6292
transcription factor binding 4.5626E-5 2 43 2 6292
transcription repressor activity 4.7798E-5 2 44 2 6292
transcription regulator activity 2.8947E-3 2 339 2 6292
protein binding 9.4468E-3 2 612 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle