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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.30456625225]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

cytosolic small ribosomal subunit 3.552E-5 2 38 2 6292
small ribosomal subunit 1.3278E-4 2 73 2 6292
cytosolic ribosome 2.5516E-4 2 101 2 6292
cytosolic part 3.7294E-4 2 122 2 6292
ribosomal subunit 8.4142E-4 2 183 2 6292
cytosol 2.0305E-3 2 284 2 6292
ribosome 2.1173E-3 2 290 2 6292
90S preribosome 5.3968E-3 2 17 1 6292
ribonucleoprotein complex 6.6615E-3 2 514 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosomal small subunit assembly 4.5979E-6 2 14 2 6292
ribosomal small subunit biogenesis 1.6421E-5 2 26 2 6292
ribosomal subunit assembly 7.5032E-5 2 55 2 6292
ribosome assembly 1.0186E-4 2 64 2 6292
organelle assembly 1.1854E-4 2 69 2 6292
ribonucleoprotein complex assembly 2.1151E-4 2 92 2 6292
cellular macromolecular complex assembly 8.3223E-4 2 182 2 6292
cellular macromolecular complex subunit organization 1.6882E-3 2 259 2 6292
macromolecular complex assembly 1.9877E-3 2 281 2 6292
ribosome biogenesis 3.0157E-3 2 346 2 6292
macromolecular complex subunit organization 3.2108E-3 2 357 2 6292
ribonucleoprotein complex biogenesis 3.5243E-3 2 374 2 6292
translation 3.5621E-3 2 376 2 6292
cellular component assembly 3.7349E-3 2 385 2 6292
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 4.1283E-3 2 13 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

structural constituent of ribosome 1.1301E-3 2 212 2 6292
structural molecule activity 2.8947E-3 2 339 2 6292
rRNA binding 5.0798E-3 2 16 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle