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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.48493976319]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

transcription factor TFIID complex 5.3053E-6 2 15 2 6292
SLIK (SAGA-like) complex 6.0632E-6 2 16 2 6292
SAGA complex 1.1672E-5 2 22 2 6292
SAGA-type complex 1.2783E-5 2 23 2 6292
histone acetyltransferase complex 4.7798E-5 2 44 2 6292
DNA-directed RNA polymerase II, holoenzyme 7.7811E-5 2 56 2 6292
transcription factor complex 1.2556E-4 2 71 2 6292
nucleoplasm part 1.5102E-3 2 245 2 6292
nucleoplasm 1.7541E-3 2 264 2 6292
nuclear lumen 5.1728E-3 2 453 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

regulation of transcription involved in G1 phase of mitotic cell cycle 4.5979E-6 2 14 2 6292
G1 phase of mitotic cell cycle 1.7735E-5 2 27 2 6292
G1 phase 1.7735E-5 2 27 2 6292
histone acetylation 3.1832E-5 2 36 2 6292
protein amino acid acetylation 5.2295E-5 2 46 2 6292
transcription initiation from RNA polymerase II promoter 5.4619E-5 2 47 2 6292
transcription initiation 8.3521E-5 2 58 2 6292
protein amino acid acylation 8.6451E-5 2 59 2 6292
covalent chromatin modification 1.9342E-4 2 88 2 6292
histone modification 1.9342E-4 2 88 2 6292
interphase of mitotic cell cycle 2.3525E-4 2 97 2 6292
interphase 2.3525E-4 2 97 2 6292
protein complex biogenesis 6.0304E-4 2 155 2 6292
protein complex assembly 6.0304E-4 2 155 2 6292
chromatin modification 7.0879E-4 2 168 2 6292
chromatin organization 1.036E-3 2 203 2 6292
regulation of transcription from RNA polymerase II promoter 1.3075E-3 2 228 2 6292
mitotic cell cycle 1.6363E-3 2 255 2 6292
macromolecular complex assembly 1.9877E-3 2 281 2 6292
transcription from RNA polymerase II promoter 2.8267E-3 2 335 2 6292
post-translational protein modification 3.2108E-3 2 357 2 6292
macromolecular complex subunit organization 3.2108E-3 2 357 2 6292
regulation of transcription, DNA-dependent 3.2288E-3 2 358 2 6292
regulation of RNA metabolic process 3.3198E-3 2 363 2 6292
cell cycle phase 3.5621E-3 2 376 2 6292
regulation of transcription 3.7155E-3 2 384 2 6292
cellular component assembly 3.7349E-3 2 385 2 6292
regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 4.3405E-3 2 415 2 6292
regulation of nitrogen compound metabolic process 4.3615E-3 2 416 2 6292
regulation of gene expression 4.9915E-3 2 445 2 6292
regulation of macromolecule biosynthetic process 5.2416E-3 2 456 2 6292
regulation of cellular biosynthetic process 5.6164E-3 2 472 2 6292
regulation of biosynthetic process 5.6402E-3 2 473 2 6292
regulation of macromolecule metabolic process 6.004E-3 2 488 2 6292
cell cycle process 6.0534E-3 2 490 2 6292
protein modification process 6.278E-3 2 499 2 6292
transcription, DNA-dependent 6.3792E-3 2 503 2 6292
RNA biosynthetic process 6.5067E-3 2 508 2 6292
regulation of primary metabolic process 6.6615E-3 2 514 2 6292
cell cycle 6.95E-3 2 525 2 6292
regulation of cellular metabolic process 7.2445E-3 2 536 2 6292
regulation of metabolic process 7.5452E-3 2 547 2 6292
transcription 7.6839E-3 2 552 2 6292
chromosome organization 7.7677E-3 2 555 2 6292
macromolecule modification 8.1649E-3 2 569 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

general RNA polymerase II transcription factor activity 1.0186E-4 2 64 2 6292
RNA polymerase II transcription factor activity 4.2367E-4 2 130 2 6292
transcription regulator activity 2.8947E-3 2 339 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle