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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classfier did not use Gene Ontology annotations. [FDR: 0.091] [SVM Score: 0.277667615382]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nuclear chromatin 1.3278E-4 2 73 2 6292
chromatin 1.4784E-4 2 77 2 6292
nuclear chromosome part 9.0721E-4 2 190 2 6292
transcription factor TFIIF complex 9.5344E-4 2 3 1 6292
nuclear chromosome 1.3075E-3 2 228 2 6292
chromosomal part 1.413E-3 2 237 2 6292
chromosome 1.8898E-3 2 274 2 6292
Ino80 complex 3.4937E-3 2 11 1 6292
DNA helicase complex 3.4937E-3 2 11 1 6292
SWI/SNF-type complex 4.1283E-3 2 13 1 6292
SWI/SNF complex 4.1283E-3 2 13 1 6292
transcription factor TFIID complex 4.7627E-3 2 15 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

chromatin remodeling 1.151E-4 2 68 2 6292
chromatin modification 7.0879E-4 2 168 2 6292
chromatin organization 1.036E-3 2 203 2 6292
cell cycle phase 3.5621E-3 2 376 2 6292
regulation of transcription involved in G1 phase of mitotic cell cycle 4.4455E-3 2 14 1 6292
cell cycle process 6.0534E-3 2 490 2 6292
cell cycle 6.95E-3 2 525 2 6292
chromosome organization 7.7677E-3 2 555 2 6292
G1 phase of mitotic cell cycle 8.5646E-3 2 27 1 6292
G1 phase 8.5646E-3 2 27 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

transcription regulator activity 2.8947E-3 2 339 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle