From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classfier did not use Gene Ontology annotations. [FDR: 0.073] [SVM Score: 0.346241865984] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
SEC21 |
|
|
|
YMD8 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
COPI-coated vesicle | 1.0611E-5 | 2 | 21 | 2 | 6292 |
Golgi-associated vesicle | 3.9411E-5 | 2 | 40 | 2 | 6292 |
coated vesicle | 1.7194E-4 | 2 | 83 | 2 | 6292 |
cytoplasmic vesicle | 2.8654E-4 | 2 | 107 | 2 | 6292 |
membrane-bounded vesicle | 2.8654E-4 | 2 | 107 | 2 | 6292 |
cytoplasmic membrane-bounded vesicle | 2.8654E-4 | 2 | 107 | 2 | 6292 |
vesicle | 3.0291E-4 | 2 | 110 | 2 | 6292 |
Golgi apparatus part | 3.5475E-4 | 2 | 119 | 2 | 6292 |
Golgi apparatus | 7.3441E-4 | 2 | 171 | 2 | 6292 |
COPI coated vesicle membrane | 2.859E-3 | 2 | 9 | 1 | 6292 |
COPI vesicle coat | 2.859E-3 | 2 | 9 | 1 | 6292 |
Golgi-associated vesicle membrane | 5.0798E-3 | 2 | 16 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
nucleotide-sugar transport | 1.2712E-3 | 2 | 4 | 1 | 6292 |
retrograde vesicle-mediated transport, Golgi to ER | 8.248E-3 | 2 | 26 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
nucleotide-sugar transmembrane transporter activity | 1.2712E-3 | 2 | 4 | 1 | 6292 |
carbohydrate transmembrane transporter activity | 9.5139E-3 | 2 | 30 | 1 | 6292 |