From Publication:  Qiu J, Noble WS (2008) Predicting CoComplexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 
Notes:  Classfier did not use Gene Ontology annotations. [FDR: 0.057] [SVM Score: 0.357098450967] 
Complex Size:  2 proteins 
Protein 
GO Cellular Component  GO Biological Process  GO Molecular Function 
NIP7 



NUG1 



Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the pvalue represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a pvalue less than or equal to 0.01.
GO Term 
Pvalue 
A 
B 
I 
T 
nucleolus  1.1194E3  2  211  2  6292 
nuclear lumen  5.1728E3  2  453  2  6292 
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the pvalue represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a pvalue less than or equal to 0.01.
GO Term 
Pvalue 
A 
B 
I 
T 
rRNA processing  4.1068E4  2  128  2  6292 
rRNA metabolic process  4.7071E4  2  137  2  6292 
ncRNA processing  1.1624E3  2  215  2  6292 
ncRNA metabolic process  1.6621E3  2  257  2  6292 
ribosome biogenesis  3.0157E3  2  346  2  6292 
ribonucleoprotein complex biogenesis  3.5243E3  2  374  2  6292 
RNA processing  3.6384E3  2  380  2  6292 
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the pvalue represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a pvalue less than or equal to 0.01.
GO Term 
Pvalue 
A 
B 
I 
T 