From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classfier did not use Gene Ontology annotations. [FDR: 0.073] [SVM Score: 0.359970029642] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
COX13 |
|
|
|
INH1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
mitochondrial membrane part | 2.5011E-4 | 2 | 100 | 2 | 6292 |
mitochondrial inner membrane | 7.6048E-4 | 2 | 174 | 2 | 6292 |
organelle inner membrane | 8.5997E-4 | 2 | 185 | 2 | 6292 |
mitochondrial membrane | 1.7808E-3 | 2 | 266 | 2 | 6292 |
mitochondrial envelope | 2.4514E-3 | 2 | 312 | 2 | 6292 |
mitochondrial respiratory chain complex IV | 3.811E-3 | 2 | 12 | 1 | 6292 |
respiratory chain complex IV | 3.811E-3 | 2 | 12 | 1 | 6292 |
mitochondrial part | 5.6881E-3 | 2 | 475 | 2 | 6292 |
mitochondrial proton-transporting ATP synthase complex | 6.3477E-3 | 2 | 20 | 1 | 6292 |
proton-transporting ATP synthase complex | 6.3477E-3 | 2 | 20 | 1 | 6292 |
envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
organelle envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
mitochondrial respiratory chain | 8.248E-3 | 2 | 26 | 1 | 6292 |
respiratory chain | 8.248E-3 | 2 | 26 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
generation of precursor metabolites and energy | 9.5571E-4 | 2 | 195 | 2 | 6292 |
ATP synthesis coupled proton transport | 6.3477E-3 | 2 | 20 | 1 | 6292 |
energy coupled proton transport, down electrochemical gradient | 6.3477E-3 | 2 | 20 | 1 | 6292 |
ATP metabolic process | 6.3477E-3 | 2 | 20 | 1 | 6292 |
ATP biosynthetic process | 6.3477E-3 | 2 | 20 | 1 | 6292 |
purine ribonucleoside triphosphate biosynthetic process | 6.9813E-3 | 2 | 22 | 1 | 6292 |
purine nucleoside triphosphate biosynthetic process | 6.9813E-3 | 2 | 22 | 1 | 6292 |
proton transport | 7.6148E-3 | 2 | 24 | 1 | 6292 |
ribonucleoside triphosphate biosynthetic process | 7.6148E-3 | 2 | 24 | 1 | 6292 |
hydrogen transport | 7.6148E-3 | 2 | 24 | 1 | 6292 |
purine ribonucleoside triphosphate metabolic process | 8.5646E-3 | 2 | 27 | 1 | 6292 |
purine nucleoside triphosphate metabolic process | 8.5646E-3 | 2 | 27 | 1 | 6292 |
nucleoside triphosphate biosynthetic process | 8.5646E-3 | 2 | 27 | 1 | 6292 |
ribonucleoside triphosphate metabolic process | 9.1975E-3 | 2 | 29 | 1 | 6292 |
monovalent inorganic cation transport | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
enzyme regulator activity | 1.0773E-3 | 2 | 207 | 2 | 6292 |
heme-copper terminal oxidase activity | 3.811E-3 | 2 | 12 | 1 | 6292 |
cytochrome-c oxidase activity | 3.811E-3 | 2 | 12 | 1 | 6292 |
oxidoreductase activity, acting on heme group of donors | 3.811E-3 | 2 | 12 | 1 | 6292 |
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor | 3.811E-3 | 2 | 12 | 1 | 6292 |
enzyme inhibitor activity | 8.5646E-3 | 2 | 27 | 1 | 6292 |