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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classfier did not use Gene Ontology annotations. [FDR: 0.057] [SVM Score: 0.381232060685]
Complex Size: 2 proteins

Complex Member Proteins

Protein

GO Cellular Component GO Biological Process GO Molecular Function
APT1
  • nucleus
  • cytoplasm
  • AMP biosynthetic process
  • adenine salvage
  • adenine phosphoribosyltransferase activity
  • RPL40B, RPL40A

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    AMP biosynthetic process 3.1786E-4 2 1 1 6292
    adenine salvage 3.1786E-4 2 1 1 6292
    purine base salvage 3.1786E-4 2 1 1 6292
    adenine biosynthetic process 6.3568E-4 2 2 1 6292
    adenine metabolic process 9.5344E-4 2 3 1 6292
    AMP metabolic process 1.2712E-3 2 4 1 6292
    purine base biosynthetic process 2.224E-3 2 7 1 6292
    purine salvage 3.1764E-3 2 10 1 6292
    purine base metabolic process 4.7627E-3 2 15 1 6292
    purine ribonucleoside monophosphate biosynthetic process 6.0308E-3 2 19 1 6292
    ribonucleoside monophosphate biosynthetic process 6.3477E-3 2 20 1 6292
    purine nucleoside monophosphate biosynthetic process 6.3477E-3 2 20 1 6292
    pigment biosynthetic process 6.3477E-3 2 20 1 6292
    cellular metabolic compound salvage 6.9813E-3 2 22 1 6292
    pigment metabolic process 6.9813E-3 2 22 1 6292
    nucleobase biosynthetic process 7.2981E-3 2 23 1 6292
    purine ribonucleoside monophosphate metabolic process 7.6148E-3 2 24 1 6292
    ribonucleoside monophosphate metabolic process 7.9314E-3 2 25 1 6292
    purine nucleoside monophosphate metabolic process 7.9314E-3 2 25 1 6292
    nucleoside monophosphate biosynthetic process 8.5646E-3 2 27 1 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    adenine phosphoribosyltransferase activity 6.3568E-4 2 2 1 6292
    transferase activity, transferring pentosyl groups 5.3968E-3 2 17 1 6292

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle