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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classfier did not use Gene Ontology annotations. [FDR: 0.039] [SVM Score: 0.482711378551]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

proton-transporting ATP synthase, catalytic core 6.3568E-4 2 2 1 6292
mitochondrial proton-transporting ATP synthase, catalytic core 6.3568E-4 2 2 1 6292
proton-transporting ATP synthase complex, catalytic core F(1) 1.5888E-3 2 5 1 6292
mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) 1.5888E-3 2 5 1 6292
proton-transporting two-sector ATPase complex, catalytic domain 4.1283E-3 2 13 1 6292
mitochondrial proton-transporting ATP synthase complex 6.3477E-3 2 20 1 6292
proton-transporting ATP synthase complex 6.3477E-3 2 20 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

age-dependent general metabolic decline involved in replicative cell aging 3.1786E-4 2 1 1 6292
age-dependent general metabolic decline 2.5415E-3 2 8 1 6292
ATP synthesis coupled proton transport 6.3477E-3 2 20 1 6292
energy coupled proton transport, down electrochemical gradient 6.3477E-3 2 20 1 6292
ATP metabolic process 6.3477E-3 2 20 1 6292
ATP biosynthetic process 6.3477E-3 2 20 1 6292
purine ribonucleoside triphosphate biosynthetic process 6.9813E-3 2 22 1 6292
purine nucleoside triphosphate biosynthetic process 6.9813E-3 2 22 1 6292
proton transport 7.6148E-3 2 24 1 6292
ribonucleoside triphosphate biosynthetic process 7.6148E-3 2 24 1 6292
hydrogen transport 7.6148E-3 2 24 1 6292
purine ribonucleoside triphosphate metabolic process 8.5646E-3 2 27 1 6292
purine nucleoside triphosphate metabolic process 8.5646E-3 2 27 1 6292
nucleoside triphosphate biosynthetic process 8.5646E-3 2 27 1 6292
ribonucleoside triphosphate metabolic process 9.1975E-3 2 29 1 6292
monovalent inorganic cation transport 9.8303E-3 2 31 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

hydrogen ion transporting ATP synthase activity, rotational mechanism 4.7627E-3 2 15 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle