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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classfier did not use Gene Ontology annotations. [FDR: 0.021] [SVM Score: 0.569322241351]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

SAGA complex 1.1672E-5 2 22 2 6292
SAGA-type complex 1.2783E-5 2 23 2 6292
histone acetyltransferase complex 4.7798E-5 2 44 2 6292
nucleoplasm part 1.5102E-3 2 245 2 6292
nucleoplasm 1.7541E-3 2 264 2 6292
transcription factor TFIID complex 4.7627E-3 2 15 1 6292
SLIK (SAGA-like) complex 5.0798E-3 2 16 1 6292
nuclear lumen 5.1728E-3 2 453 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

post-translational protein modification 3.2108E-3 2 357 2 6292
regulation of transcription involved in G1 phase of mitotic cell cycle 4.4455E-3 2 14 1 6292
protein modification process 6.278E-3 2 499 2 6292
protein deubiquitination 6.6645E-3 2 21 1 6292
macromolecule modification 8.1649E-3 2 569 2 6292
G1 phase of mitotic cell cycle 8.5646E-3 2 27 1 6292
G1 phase 8.5646E-3 2 27 1 6292
protein modification by small protein removal 9.1975E-3 2 29 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ubiquitin-specific protease activity 6.3477E-3 2 20 1 6292
small conjugating protein-specific protease activity 6.9813E-3 2 22 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle