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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classfier did not use Gene Ontology annotations. [FDR: 0.021] [SVM Score: 0.571088150204]
Complex Size: 2 proteins

Complex Member Proteins

Protein

GO Cellular Component GO Biological Process GO Molecular Function
AAR2
  • U5 snRNP
  • assembly of spliceosomal tri-snRNP
  • molecular_function
  • HSH155
  • U2 snRNP
  • spliceosome assembly
  • mRNA binding
  • Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    small nuclear ribonucleoprotein complex 9.8679E-5 2 63 2 6292
    U2 snRNP 4.1283E-3 2 13 1 6292
    U5 snRNP 4.4455E-3 2 14 1 6292
    ribonucleoprotein complex 6.6615E-3 2 514 2 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    ribonucleoprotein complex assembly 2.1151E-4 2 92 2 6292
    nuclear mRNA splicing, via spliceosome 2.4511E-4 2 99 2 6292
    RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 2.5011E-4 2 100 2 6292
    RNA splicing, via transesterification reactions 2.8654E-4 2 107 2 6292
    RNA splicing 4.3685E-4 2 132 2 6292
    mRNA processing 6.1087E-4 2 156 2 6292
    assembly of spliceosomal tri-snRNP 6.3568E-4 2 2 1 6292
    spliceosomal snRNP assembly 6.3568E-4 2 2 1 6292
    cellular macromolecular complex assembly 8.3223E-4 2 182 2 6292
    mRNA metabolic process 1.1408E-3 2 213 2 6292
    cellular macromolecular complex subunit organization 1.6882E-3 2 259 2 6292
    macromolecular complex assembly 1.9877E-3 2 281 2 6292
    macromolecular complex subunit organization 3.2108E-3 2 357 2 6292
    ribonucleoprotein complex biogenesis 3.5243E-3 2 374 2 6292
    RNA processing 3.6384E-3 2 380 2 6292
    cellular component assembly 3.7349E-3 2 385 2 6292
    spliceosome assembly 5.7138E-3 2 18 1 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle