From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classfier did not use Gene Ontology annotations. [FDR: 0.021] [SVM Score: 0.57401068225] |
Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
Golgi apparatus | 7.3441E-4 | 2 | 171 | 2 | 6292 |
alpha-1,6-mannosyltransferase complex | 1.9064E-3 | 2 | 6 | 1 | 6292 |
mannosyltransferase complex | 1.9064E-3 | 2 | 6 | 1 | 6292 |
Golgi cis cisterna | 3.1764E-3 | 2 | 10 | 1 | 6292 |
Golgi stack | 5.0798E-3 | 2 | 16 | 1 | 6292 |
Golgi cisterna | 5.0798E-3 | 2 | 16 | 1 | 6292 |
organelle subcompartment | 5.0798E-3 | 2 | 16 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
intra-Golgi vesicle-mediated transport | 6.9813E-3 | 2 | 22 | 1 | 6292 |
retrograde vesicle-mediated transport, Golgi to ER | 8.248E-3 | 2 | 26 | 1 | 6292 |
vesicle fusion | 9.1975E-3 | 2 | 29 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
alpha-1,6-mannosyltransferase activity | 1.9064E-3 | 2 | 6 | 1 | 6292 |