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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classfier did not use Gene Ontology annotations. [FDR: 0.021] [SVM Score: 0.618212432751]
Complex Size: 2 proteins

Complex Member Proteins

Protein

GO Cellular Component GO Biological Process GO Molecular Function
CWC2
  • spliceosomal complex
  • nuclear mRNA splicing, via spliceosome
  • molecular_function
  • PRP11
  • U2 snRNP
  • spliceosome assembly
  • RNA binding
  • Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    U2 snRNP 4.1283E-3 2 13 1 6292
    ribonucleoprotein complex 6.6615E-3 2 514 2 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    nuclear mRNA splicing, via spliceosome 2.4511E-4 2 99 2 6292
    RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 2.5011E-4 2 100 2 6292
    RNA splicing, via transesterification reactions 2.8654E-4 2 107 2 6292
    RNA splicing 4.3685E-4 2 132 2 6292
    mRNA processing 6.1087E-4 2 156 2 6292
    mRNA metabolic process 1.1408E-3 2 213 2 6292
    RNA processing 3.6384E-3 2 380 2 6292
    spliceosome assembly 5.7138E-3 2 18 1 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle