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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classfier did not use Gene Ontology annotations. [FDR: 0.021] [SVM Score: 0.772230816983]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nuclear outer membrane 1.8468E-4 2 86 2 6292
nuclear membrane 2.3525E-4 2 97 2 6292
outer membrane 7.9595E-4 2 178 2 6292
organelle outer membrane 7.9595E-4 2 178 2 6292
nuclear envelope 9.9543E-4 2 199 2 6292
nucleolus 1.1194E-3 2 211 2 6292
nuclear membrane-endoplasmic reticulum network 1.3539E-3 2 232 2 6292
endomembrane system 3.9918E-3 2 398 2 6292
nuclear lumen 5.1728E-3 2 453 2 6292
envelope 6.43E-3 2 505 2 6292
organelle envelope 6.43E-3 2 505 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosomal large subunit assembly 4.1432E-5 2 41 2 6292
ribosomal subunit assembly 7.5032E-5 2 55 2 6292
ribosome assembly 1.0186E-4 2 64 2 6292
ribosomal large subunit biogenesis 1.051E-4 2 65 2 6292
organelle assembly 1.1854E-4 2 69 2 6292
ribonucleoprotein complex assembly 2.1151E-4 2 92 2 6292
cellular macromolecular complex assembly 8.3223E-4 2 182 2 6292
cellular macromolecular complex subunit organization 1.6882E-3 2 259 2 6292
macromolecular complex assembly 1.9877E-3 2 281 2 6292
ribosome biogenesis 3.0157E-3 2 346 2 6292
macromolecular complex subunit organization 3.2108E-3 2 357 2 6292
ribonucleoprotein complex biogenesis 3.5243E-3 2 374 2 6292
cellular component assembly 3.7349E-3 2 385 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ATP-dependent RNA helicase activity 1.9099E-5 2 28 2 6292
RNA-dependent ATPase activity 2.0514E-5 2 29 2 6292
RNA helicase activity 4.3504E-5 2 42 2 6292
ATP-dependent helicase activity 5.6994E-5 2 48 2 6292
purine NTP-dependent helicase activity 5.6994E-5 2 48 2 6292
helicase activity 1.7194E-4 2 83 2 6292
ATPase activity, coupled 5.5711E-4 2 149 2 6292
ATPase activity 1.1194E-3 2 211 2 6292
nucleoside-triphosphatase activity 2.7262E-3 2 329 2 6292
hydrolase activity, acting on acid anhydrides 3.1391E-3 2 353 2 6292
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 3.1391E-3 2 353 2 6292
pyrophosphatase activity 3.1391E-3 2 353 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle