From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classfier did not use Gene Ontology annotations. [FDR: 0.021] [SVM Score: 0.927224625647] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
AIP1 |
|
|
|
LAS17 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
actin cortical patch | 4.1432E-5 | 2 | 41 | 2 | 6292 |
cortical actin cytoskeleton | 6.6999E-5 | 2 | 52 | 2 | 6292 |
cortical cytoskeleton | 6.6999E-5 | 2 | 52 | 2 | 6292 |
actin cytoskeleton | 1.8038E-4 | 2 | 85 | 2 | 6292 |
cell cortex part | 2.304E-4 | 2 | 96 | 2 | 6292 |
cell cortex | 2.974E-4 | 2 | 109 | 2 | 6292 |
cytoskeletal part | 1.0156E-3 | 2 | 201 | 2 | 6292 |
cytoskeleton | 1.1732E-3 | 2 | 216 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
actin polymerization or depolymerization | 1.819E-6 | 2 | 9 | 2 | 6292 |
actin filament organization | 1.151E-4 | 2 | 68 | 2 | 6292 |
response to osmotic stress | 1.4784E-4 | 2 | 77 | 2 | 6292 |
actin cytoskeleton organization | 3.1973E-4 | 2 | 113 | 2 | 6292 |
actin filament-based process | 3.4287E-4 | 2 | 117 | 2 | 6292 |
response to abiotic stimulus | 3.4287E-4 | 2 | 117 | 2 | 6292 |
actin filament depolymerization | 1.2712E-3 | 2 | 4 | 1 | 6292 |
cytoskeleton organization | 1.3422E-3 | 2 | 231 | 2 | 6292 |
cellular macromolecular complex subunit organization | 1.6882E-3 | 2 | 259 | 2 | 6292 |
protein depolymerization | 3.1764E-3 | 2 | 10 | 1 | 6292 |
macromolecular complex subunit organization | 3.2108E-3 | 2 | 357 | 2 | 6292 |
response to stress | 6.2277E-3 | 2 | 497 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
protein binding | 9.4468E-3 | 2 | 612 | 2 | 6292 |