From Publication: | Ho Y. et al. (2002) Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature. 2002 Jan 10;415(6868):180-3. |
Notes: | This molecular complex record represents a population of complexes co-purified by immunoprecipitation of FLAG-tagged Rad16. The topolgies of protein complexes in this experiment are unknown. |
Complex Size: | 9 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
nucleotide-excision repair factor 4 complex | 1.0898E-5 | 9 | 4 | 2 | 6292 |
repairosome | 1.0898E-5 | 9 | 4 | 2 | 6292 |
nuclear nucleosome | 1.1916E-4 | 9 | 12 | 2 | 6292 |
nucleosome | 1.1916E-4 | 9 | 12 | 2 | 6292 |
nuclear chromatin | 1.1973E-4 | 9 | 73 | 3 | 6292 |
chromatin | 1.4042E-4 | 9 | 77 | 3 | 6292 |
nucleotide-excision repair complex | 3.7663E-4 | 9 | 21 | 2 | 6292 |
nuclear chromosome part | 1.9904E-3 | 9 | 190 | 3 | 6292 |
protein-DNA complex | 2.7869E-3 | 9 | 57 | 2 | 6292 |
replication fork protection complex | 2.859E-3 | 9 | 2 | 1 | 6292 |
nuclear chromosome | 3.3545E-3 | 9 | 228 | 3 | 6292 |
chromosomal part | 3.7449E-3 | 9 | 237 | 3 | 6292 |
chromosome | 5.6423E-3 | 9 | 274 | 3 | 6292 |
nucleus | 6.9589E-3 | 9 | 2041 | 7 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
nucleotide-excision repair, DNA damage recognition | 3.8057E-5 | 9 | 7 | 2 | 6292 |
response to stress | 2.9062E-4 | 9 | 497 | 5 | 6292 |
chromosome organization | 4.8941E-4 | 9 | 555 | 5 | 6292 |
chromatin assembly or disassembly | 1.0561E-3 | 9 | 35 | 2 | 6292 |
nucleotide-excision repair | 1.245E-3 | 9 | 38 | 2 | 6292 |
histone H3-K79 methylation | 1.4304E-3 | 9 | 1 | 1 | 6292 |
DNA repair | 2.0512E-3 | 9 | 192 | 3 | 6292 |
response to stimulus | 2.1816E-3 | 9 | 766 | 5 | 6292 |
histone lysine methylation | 2.859E-3 | 9 | 2 | 1 | 6292 |
response to DNA damage stimulus | 3.7002E-3 | 9 | 236 | 3 | 6292 |
response to oxidative stress | 4.0601E-3 | 9 | 69 | 2 | 6292 |
DNA metabolic process | 6.3704E-3 | 9 | 585 | 4 | 6292 |
cellular response to stress | 6.6158E-3 | 9 | 290 | 3 | 6292 |
pentose-phosphate shunt, oxidative branch | 8.5551E-3 | 9 | 6 | 1 | 6292 |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 9.7168E-3 | 9 | 1566 | 6 | 6292 |
glucose metabolic process | 9.888E-3 | 9 | 109 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
damaged DNA binding | 9.9377E-5 | 9 | 11 | 2 | 6292 |
DNA binding | 2.8694E-4 | 9 | 256 | 4 | 6292 |
DNA-dependent ATPase activity | 2.5969E-3 | 9 | 55 | 2 | 6292 |
phosphogluconate dehydrogenase (decarboxylating) activity | 2.859E-3 | 9 | 2 | 1 | 6292 |
oxidoreductase activity | 6.0565E-3 | 9 | 281 | 3 | 6292 |