From Publication: | Gavin A.C. et al. (2006) Proteome survey reveals modularity of the yeast cell machinery. Nature. 2006 Mar 30;440(7084):631-6. Epub 2006 Jan 22. |
Notes: | From the published set of protein complexes (core proteins only) |
Complex Size: | 6 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
histone deacetylase complex | 1.1742E-15 | 6 | 23 | 6 | 6292 |
chromatin remodeling complex | 1.3033E-11 | 6 | 99 | 6 | 6292 |
nucleoplasm part | 3.2848E-9 | 6 | 245 | 6 | 6292 |
nucleoplasm | 5.1651E-9 | 6 | 264 | 6 | 6292 |
nuclear lumen | 1.3504E-7 | 6 | 453 | 6 | 6292 |
organelle lumen | 1.3052E-6 | 6 | 660 | 6 | 6292 |
intracellular organelle lumen | 1.3052E-6 | 6 | 660 | 6 | 6292 |
membrane-enclosed lumen | 1.8602E-6 | 6 | 700 | 6 | 6292 |
nuclear part | 2.8697E-5 | 6 | 1103 | 6 | 6292 |
protein complex | 3.4445E-5 | 6 | 1137 | 6 | 6292 |
macromolecular complex | 3.0579E-4 | 6 | 1635 | 6 | 6292 |
nucleus | 1.1592E-3 | 6 | 2041 | 6 | 6292 |
organelle part | 2.2664E-3 | 6 | 2282 | 6 | 6292 |
intracellular organelle part | 2.2664E-3 | 6 | 2282 | 6 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
NAD-independent histone deacetylase activity | 1.5353E-15 | 6 | 7 | 5 | 6292 |
NAD-dependent protein deacetylase activity | 9.2092E-15 | 6 | 9 | 5 | 6292 |
NAD-dependent histone deacetylase activity | 9.2092E-15 | 6 | 9 | 5 | 6292 |
histone deacetylase activity | 1.4673E-11 | 6 | 32 | 5 | 6292 |
protein deacetylase activity | 1.4673E-11 | 6 | 32 | 5 | 6292 |
deacetylase activity | 2.3645E-11 | 6 | 35 | 5 | 6292 |
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 1.245E-10 | 6 | 48 | 5 | 6292 |
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | 1.7405E-9 | 6 | 80 | 5 | 6292 |
hydrolase activity | 3.3278E-4 | 6 | 911 | 5 | 6292 |
catalytic activity | 1.5845E-3 | 6 | 2150 | 6 | 6292 |