From Publication: | Krogan N. J. et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature. 2006 Mar 30;440(7084):637-43. Epub 2006 Mar 22. |
Notes: | From the published set of core protein complex predictions. |
Complex Size: | 39 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
organellar small ribosomal subunit | 1.5523E-61 | 39 | 35 | 28 | 6292 |
mitochondrial small ribosomal subunit | 1.5523E-61 | 39 | 35 | 28 | 6292 |
small ribosomal subunit | 2.6519E-48 | 39 | 73 | 28 | 6292 |
organellar ribosome | 1.2354E-47 | 39 | 90 | 29 | 6292 |
mitochondrial ribosome | 1.2354E-47 | 39 | 90 | 29 | 6292 |
mitochondrial matrix | 3.3864E-40 | 39 | 176 | 30 | 6292 |
mitochondrial lumen | 3.3864E-40 | 39 | 176 | 30 | 6292 |
ribosomal subunit | 1.4295E-37 | 39 | 183 | 29 | 6292 |
ribosome | 1.8552E-31 | 39 | 290 | 29 | 6292 |
mitochondrial part | 1.0199E-26 | 39 | 475 | 30 | 6292 |
ribonucleoprotein complex | 3.9521E-24 | 39 | 514 | 29 | 6292 |
organelle lumen | 1.9402E-22 | 39 | 660 | 30 | 6292 |
intracellular organelle lumen | 1.9402E-22 | 39 | 660 | 30 | 6292 |
membrane-enclosed lumen | 1.1078E-21 | 39 | 700 | 30 | 6292 |
mitochondrion | 1.5447E-19 | 39 | 1125 | 33 | 6292 |
non-membrane-bounded organelle | 1.1025E-17 | 39 | 959 | 30 | 6292 |
intracellular non-membrane-bounded organelle | 1.1025E-17 | 39 | 959 | 30 | 6292 |
macromolecular complex | 3.7041E-11 | 39 | 1635 | 30 | 6292 |
cytoplasmic part | 7.632E-9 | 39 | 2482 | 33 | 6292 |
organelle part | 3.9146E-8 | 39 | 2282 | 31 | 6292 |
intracellular organelle part | 3.9146E-8 | 39 | 2282 | 31 | 6292 |
cytoplasm | 9.0934E-8 | 39 | 3552 | 37 | 6292 |
membrane-bounded organelle | 6.2561E-6 | 39 | 3771 | 36 | 6292 |
intracellular membrane-bounded organelle | 6.2561E-6 | 39 | 3771 | 36 | 6292 |
intracellular organelle | 6.9542E-5 | 39 | 4070 | 36 | 6292 |
organelle | 7.0075E-5 | 39 | 4071 | 36 | 6292 |
intracellular part | 8.9674E-4 | 39 | 4938 | 38 | 6292 |
intracellular | 1.1631E-3 | 39 | 4975 | 38 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
translation | 4.2316E-28 | 39 | 376 | 29 | 6292 |
cellular protein metabolic process | 4.3283E-15 | 39 | 1074 | 29 | 6292 |
protein metabolic process | 2.0069E-14 | 39 | 1136 | 29 | 6292 |
gene expression | 4.4682E-14 | 39 | 1283 | 30 | 6292 |
cellular macromolecule biosynthetic process | 6.6231E-14 | 39 | 1187 | 29 | 6292 |
macromolecule biosynthetic process | 6.9325E-14 | 39 | 1189 | 29 | 6292 |
cellular biosynthetic process | 1.0813E-12 | 39 | 1567 | 31 | 6292 |
biosynthetic process | 2.0394E-12 | 39 | 1602 | 31 | 6292 |
cellular macromolecule metabolic process | 4.0553E-8 | 39 | 2285 | 31 | 6292 |
cellular metabolic process | 4.9049E-8 | 39 | 3033 | 35 | 6292 |
macromolecule metabolic process | 8.5E-8 | 39 | 2349 | 31 | 6292 |
metabolic process | 1.7358E-7 | 39 | 3157 | 35 | 6292 |
primary metabolic process | 6.661E-7 | 39 | 2896 | 33 | 6292 |
cellular process | 8.9289E-4 | 39 | 4426 | 36 | 6292 |
aerobic respiration | 1.6297E-3 | 39 | 83 | 4 | 6292 |
translational initiation | 2.1389E-3 | 39 | 42 | 3 | 6292 |
cellular respiration | 2.8878E-3 | 39 | 97 | 4 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
structural constituent of ribosome | 1.3615E-35 | 39 | 212 | 29 | 6292 |
structural molecule activity | 1.9674E-29 | 39 | 339 | 29 | 6292 |
tRNA (cytosine)-methyltransferase activity | 6.1983E-3 | 39 | 1 | 1 | 6292 |
intramolecular transferase activity, transferring acyl groups | 6.1983E-3 | 39 | 1 | 1 | 6292 |
tRNA (cytosine-5-)-methyltransferase activity | 6.1983E-3 | 39 | 1 | 1 | 6292 |
6,7-dimethyl-8-ribityllumazine synthase activity | 6.1983E-3 | 39 | 1 | 1 | 6292 |