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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 3 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

carboxy-terminal domain protein kinase complex 2.4099E-11 3 3 3 6292
nuclear part 5.3751E-3 3 1103 3 6292
protein complex 5.8881E-3 3 1137 3 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

regulation of RNA elongation 2.4099E-11 3 3 3 6292
positive regulation of RNA elongation 2.4099E-11 3 3 3 6292
RNA elongation 3.4196E-7 3 45 3 6292
protein amino acid phosphorylation 4.2619E-6 3 103 3 6292
positive regulation of RNA metabolic process 4.7832E-6 3 107 3 6292
positive regulation of nitrogen compound metabolic process 6.4323E-6 3 118 3 6292
positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 6.4323E-6 3 118 3 6292
positive regulation of macromolecule metabolic process 7.8441E-6 3 126 3 6292
positive regulation of metabolic process 8.4226E-6 3 129 3 6292
positive regulation of cellular metabolic process 8.4226E-6 3 129 3 6292
positive regulation of cellular process 9.8814E-6 3 136 3 6292
positive regulation of biological process 1.0103E-5 3 137 3 6292
phosphorylation 2.2651E-5 3 179 3 6292
phosphorus metabolic process 4.7603E-5 3 229 3 6292
phosphate metabolic process 4.7603E-5 3 229 3 6292
post-translational protein modification 1.8121E-4 3 357 3 6292
regulation of transcription, DNA-dependent 1.8274E-4 3 358 3 6292
regulation of RNA metabolic process 1.9053E-4 3 363 3 6292
regulation of transcription 2.2565E-4 3 384 3 6292
regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 2.85E-4 3 415 3 6292
regulation of nitrogen compound metabolic process 2.8707E-4 3 416 3 6292
regulation of gene expression 3.5155E-4 3 445 3 6292
regulation of macromolecule biosynthetic process 3.7833E-4 3 456 3 6292
regulation of cellular biosynthetic process 4.1966E-4 3 472 3 6292
regulation of biosynthetic process 4.2234E-4 3 473 3 6292
regulation of macromolecule metabolic process 4.639E-4 3 488 3 6292
protein modification process 4.9605E-4 3 499 3 6292
transcription, DNA-dependent 5.081E-4 3 503 3 6292
RNA biosynthetic process 5.2344E-4 3 508 3 6292
regulation of primary metabolic process 5.4224E-4 3 514 3 6292
regulation of cellular metabolic process 6.1504E-4 3 536 3 6292
regulation of metabolic process 6.5376E-4 3 547 3 6292
transcription 6.7188E-4 3 552 3 6292
macromolecule modification 7.3601E-4 3 569 3 6292
regulation of cellular process 2.0181E-3 3 796 3 6292
regulation of biological process 2.2389E-3 3 824 3 6292
RNA metabolic process 3.4763E-3 3 954 3 6292
cellular protein metabolic process 4.9618E-3 3 1074 3 6292
protein metabolic process 5.8726E-3 3 1136 3 6292
cellular macromolecule biosynthetic process 6.7003E-3 3 1187 3 6292
macromolecule biosynthetic process 6.7343E-3 3 1189 3 6292
biological regulation 7.1507E-3 3 1213 3 6292
gene expression 8.4626E-3 3 1283 3 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

cyclin-dependent protein kinase activity 1.3495E-9 3 8 3 6292
protein serine/threonine kinase activity 2.9276E-6 3 91 3 6292
protein kinase activity 1.4956E-5 3 156 3 6292
phosphotransferase activity, alcohol group as acceptor 3.0706E-5 3 198 3 6292
kinase activity 4.3352E-5 3 222 3 6292
transferase activity, transferring phosphorus-containing groups 2.9545E-4 3 420 3 6292
transferase activity 2.0257E-3 3 797 3 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle