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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 3 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

histone deacetylase complex 3.8264E-5 3 23 2 6292
chromatin remodeling complex 7.2776E-4 3 99 2 6292
Sin3 complex 1.9063E-3 3 4 1 6292
Sin3-type complex 2.3825E-3 3 5 1 6292
nucleoplasm part 4.414E-3 3 245 2 6292
nucleoplasm 5.1161E-3 3 264 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

chromatin silencing at rDNA 2.3152E-5 3 18 2 6292
histone deacetylation 5.3064E-5 3 27 2 6292
protein amino acid deacetylation 6.1366E-5 3 29 2 6292
chromatin silencing at silent mating-type cassette 7.9771E-5 3 33 2 6292
chromatin silencing at telomere 2.2383E-4 3 55 2 6292
covalent chromatin modification 5.7496E-4 3 88 2 6292
histone modification 5.7496E-4 3 88 2 6292
negative regulation of gene expression, epigenetic 7.4253E-4 3 100 2 6292
gene silencing 7.4253E-4 3 100 2 6292
regulation of gene expression, epigenetic 7.4253E-4 3 100 2 6292
chromatin silencing 7.4253E-4 3 100 2 6292
negative regulation of transcription, DNA-dependent 1.8258E-3 3 157 2 6292
negative regulation of RNA metabolic process 1.849E-3 3 158 2 6292
negative regulation of transcription 1.9912E-3 3 164 2 6292
negative regulation of gene expression 1.9912E-3 3 164 2 6292
chromatin modification 2.089E-3 3 168 2 6292
negative regulation of macromolecule biosynthetic process 2.2655E-3 3 175 2 6292
negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 2.3959E-3 3 180 2 6292
negative regulation of nitrogen compound metabolic process 2.3959E-3 3 180 2 6292
negative regulation of biosynthetic process 2.6396E-3 3 189 2 6292
negative regulation of cellular biosynthetic process 2.6396E-3 3 189 2 6292
negative regulation of macromolecule metabolic process 2.7234E-3 3 192 2 6292
chromatin organization 3.0416E-3 3 203 2 6292
negative regulation of cellular metabolic process 3.2225E-3 3 209 2 6292
negative regulation of metabolic process 3.2531E-3 3 210 2 6292
negative regulation of cellular process 4.5939E-3 3 250 2 6292
negative regulation of biological process 4.7035E-3 3 253 2 6292
anatomical structure homeostasis 5.9917E-3 3 286 2 6292
telomere organization 5.9917E-3 3 286 2 6292
telomere maintenance 5.9917E-3 3 286 2 6292
post-translational protein modification 9.2699E-3 3 357 2 6292
regulation of transcription, DNA-dependent 9.321E-3 3 358 2 6292
regulation of RNA metabolic process 9.5782E-3 3 363 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

histone deacetylase activity 7.4945E-5 3 32 2 6292
protein deacetylase activity 7.4945E-5 3 32 2 6292
deacetylase activity 8.9875E-5 3 35 2 6292
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides 1.7015E-4 3 48 2 6292
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 4.7503E-4 3 80 2 6292
transcription corepressor activity 7.6106E-3 3 16 1 6292
transcription coactivator activity 9.9809E-3 3 21 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle