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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 4 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nuclear cap binding complex 9.0929E-7 4 3 2 6292
RNA cap binding complex 4.5436E-6 4 6 2 6292
U2-type spliceosomal complex 1.9966E-5 4 12 2 6292
commitment complex 1.9966E-5 4 12 2 6292
spliceosomal complex 2.974E-4 4 45 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nuclear mRNA splicing, via spliceosome 1.4406E-3 4 99 2 6292
RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 1.4697E-3 4 100 2 6292
RNA splicing, via transesterification reactions 1.6812E-3 4 107 2 6292
nuclear transport 2.4736E-3 4 130 2 6292
nucleocytoplasmic transport 2.4736E-3 4 130 2 6292
RNA splicing 2.5495E-3 4 132 2 6292
mRNA processing 3.5467E-3 4 156 2 6292
poly(A)+ mRNA export from nucleus 4.4437E-3 4 7 1 6292
mRNA metabolic process 6.5424E-3 4 213 2 6292
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 6.9763E-3 4 11 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

RNA binding 7.5347E-4 4 367 3 6292
RNA cap binding 1.2712E-3 4 2 1 6292
binding 1.7823E-3 4 1294 4 6292
nucleic acid binding 4.351E-3 4 666 3 6292
protein transmembrane transporter activity 5.7106E-3 4 9 1 6292
macromolecule transmembrane transporter activity 5.7106E-3 4 9 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle