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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 7 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

chromatin remodeling complex 1.7853E-8 7 99 5 6292
RSC complex 9.5376E-7 7 20 3 6292
nuclear part 1.7083E-4 7 1103 6 6292
intracellular organelle part 8.2061E-4 7 2282 7 6292
organelle part 8.2061E-4 7 2282 7 6292
protein complex 2.9048E-3 7 1137 5 6292
chromatin accessibility complex 4.4437E-3 7 4 1 6292
ISWI complex 4.4437E-3 7 4 1 6292
ISW1 complex 4.4437E-3 7 4 1 6292
nucleus 5.8629E-3 7 2041 6 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

chromatin remodeling 2.6236E-9 7 68 5 6292
chromatin modification 2.5731E-7 7 168 5 6292
chromatin organization 6.6344E-7 7 203 5 6292
ATP-dependent chromatin remodeling 2.169E-6 7 26 3 6292
double-strand break repair 2.405E-5 7 57 3 6292
cellular component organization 6.2893E-5 7 1582 7 6292
chromosome organization 9.4822E-5 7 555 5 6292
organelle organization 1.9369E-4 7 1127 6 6292
double-strand break repair via nonhomologous end joining 3.1446E-4 7 25 2 6292
cellular response to stimulus 3.9212E-4 7 379 4 6292
non-recombinational repair 5.8524E-4 7 34 2 6292
nucleic acid metabolic process 7.2556E-4 7 1415 6 6292
DNA repair 8.9429E-4 7 192 3 6292
RNA polymerase II transcriptional preinitiation complex assembly 1.1125E-3 7 1 1 6292
regulation of RNA polymerase II transcriptional preinitiation complex assembly 1.1125E-3 7 1 1 6292
transcription of nuclear rRNA large RNA polymerase I transcript 1.1125E-3 7 1 1 6292
regulation of transcription initiation from RNA polymerase II promoter 1.1125E-3 7 1 1 6292
transcriptional preinitiation complex assembly 1.1125E-3 7 1 1 6292
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 1.3005E-3 7 1566 6 6292
response to DNA damage stimulus 1.6304E-3 7 236 3 6292
chromatin remodeling at centromere 2.224E-3 7 2 1 6292
cellular nitrogen compound metabolic process 2.6186E-3 7 1770 6 6292
nitrogen compound metabolic process 2.8003E-3 7 1791 6 6292
cellular response to stress 2.9533E-3 7 290 3 6292
rRNA transcription 3.3344E-3 7 3 1 6292
negative regulation of transcription from RNA polymerase II promoter by pheromones 4.4437E-3 7 4 1 6292
negative regulation of gene-specific transcription from RNA polymerase II promoter 4.4437E-3 7 4 1 6292
negative regulation of gene-specific transcription 4.4437E-3 7 4 1 6292
negative regulation of transcription by pheromones 4.4437E-3 7 4 1 6292
response to stimulus 5.631E-3 7 766 4 6292
chromosome segregation 8.0653E-3 7 128 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nucleoside-triphosphatase activity 1.3095E-7 7 329 6 6292
hydrolase activity, acting on acid anhydrides 1.9973E-7 7 353 6 6292
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 1.9973E-7 7 353 6 6292
pyrophosphatase activity 1.9973E-7 7 353 6 6292
ATPase activity 8.0465E-7 7 211 5 6292
DNA-dependent ATPase activity 2.1584E-5 7 55 3 6292
hydrolase activity 5.5737E-5 7 911 6 6292
ATPase activity, coupled 4.2483E-4 7 149 3 6292
TATA-binding protein binding 2.224E-3 7 2 1 6292
rDNA binding 7.7654E-3 7 7 1 6292
catalytic activity 7.8491E-3 7 2150 6 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle