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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 3 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

FACT complex 1.5158E-7 3 2 2 6292
alpha DNA polymerase:primase complex 3.1815E-6 3 7 2 6292
nuclear replisome 2.3152E-5 3 18 2 6292
replisome 2.3152E-5 3 18 2 6292
nuclear replication fork 2.8745E-5 3 20 2 6292
transcription elongation factor complex 3.8264E-5 3 23 2 6292
replication fork 1.2996E-4 3 42 2 6292
protein-DNA complex 2.4051E-4 3 57 2 6292
nuclear chromatin 3.9536E-4 3 73 2 6292
chromatin 4.4E-4 3 77 2 6292
nuclear chromosome part 2.6674E-3 3 190 2 6292
nuclear chromosome 3.8286E-3 3 228 2 6292
chromosomal part 4.1335E-3 3 237 2 6292
nucleoplasm part 4.414E-3 3 245 2 6292
nucleoplasm 5.1161E-3 3 264 2 6292
chromosome 5.5058E-3 3 274 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

RNA elongation from RNA polymerase II promoter 1.1188E-4 3 39 2 6292
RNA elongation 1.4938E-4 3 45 2 6292
transcription initiation from RNA polymerase II promoter 1.6308E-4 3 47 2 6292
transcription initiation 2.4908E-4 3 58 2 6292
protein complex biogenesis 1.7798E-3 3 155 2 6292
protein complex assembly 1.7798E-3 3 155 2 6292
macromolecular complex assembly 5.7868E-3 3 281 2 6292
transcription from RNA polymerase II promoter 8.1809E-3 3 335 2 6292
macromolecular complex subunit organization 9.2699E-3 3 357 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

protein transmembrane transporter activity 4.2857E-3 3 9 1 6292
macromolecule transmembrane transporter activity 4.2857E-3 3 9 1 6292
RNA polymerase II transcription elongation factor activity 6.1865E-3 3 13 1 6292
transcription elongation regulator activity 9.0332E-3 3 19 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle