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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 5 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nucleolus 5.9889E-6 5 211 4 6292
nuclear outer membrane 2.4177E-5 5 86 3 6292
nuclear membrane 3.4739E-5 5 97 3 6292
non-membrane-bounded organelle 8.1528E-5 5 959 5 6292
intracellular non-membrane-bounded organelle 8.1528E-5 5 959 5 6292
nuclear lumen 1.2511E-4 5 453 4 6292
outer membrane 2.1352E-4 5 178 3 6292
organelle outer membrane 2.1352E-4 5 178 3 6292
nuclear envelope 2.9737E-4 5 199 3 6292
nuclear membrane-endoplasmic reticulum network 4.6842E-4 5 232 3 6292
organelle lumen 5.503E-4 5 660 4 6292
intracellular organelle lumen 5.503E-4 5 660 4 6292
membrane-enclosed lumen 6.9283E-4 5 700 4 6292
endomembrane system 2.2823E-3 5 398 3 6292
nuclear part 4.0435E-3 5 1103 4 6292
envelope 4.5459E-3 5 505 3 6292
organelle envelope 4.5459E-3 5 505 3 6292
organelle part 6.2578E-3 5 2282 5 6292
intracellular organelle part 6.2578E-3 5 2282 5 6292
membrane part 9.8527E-3 5 662 3 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosome biogenesis 4.8924E-7 5 346 5 6292
ribonucleoprotein complex biogenesis 7.2351E-7 5 374 5 6292
cellular component biogenesis 1.6117E-5 5 694 5 6292
rRNA processing 3.9447E-3 5 128 2 6292
rRNA metabolic process 4.5082E-3 5 137 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ATP-dependent RNA helicase activity 1.8942E-4 5 28 2 6292
RNA-dependent ATPase activity 2.0338E-4 5 29 2 6292
RNA helicase activity 4.2953E-4 5 42 2 6292
ATP-dependent helicase activity 5.6165E-4 5 48 2 6292
purine NTP-dependent helicase activity 5.6165E-4 5 48 2 6292
helicase activity 1.6756E-3 5 83 2 6292
ATPase activity, coupled 5.3152E-3 5 149 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle