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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 9 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nucleolus 1.2279E-11 9 211 8 6292
nuclear lumen 5.7468E-9 9 453 8 6292
Noc complex 2.0214E-8 9 5 3 6292
non-membrane-bounded organelle 4.2994E-8 9 959 9 6292
intracellular non-membrane-bounded organelle 4.2994E-8 9 959 9 6292
organelle lumen 1.1527E-7 9 660 8 6292
intracellular organelle lumen 1.1527E-7 9 660 8 6292
preribosome, large subunit precursor 1.6931E-7 9 9 3 6292
membrane-enclosed lumen 1.8386E-7 9 700 8 6292
Noc2p-Noc3p complex 1.819E-6 9 2 2 6292
Noc1p-Noc2p complex 1.819E-6 9 2 2 6292
nuclear part 6.6425E-6 9 1103 8 6292
preribosome 1.1847E-5 9 34 3 6292
nucleolar part 2.7873E-5 9 45 3 6292
organelle part 1.0749E-4 9 2282 9 6292
intracellular organelle part 1.0749E-4 9 2282 9 6292
90S preribosome 2.4464E-4 9 17 2 6292
nucleus 7.7873E-4 9 2041 8 6292
ribonucleoprotein complex 3.9771E-3 9 514 4 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosome biogenesis 4.6909E-8 9 346 7 6292
ribonucleoprotein complex biogenesis 8.0588E-8 9 374 7 6292
ribosome assembly 1.181E-6 9 64 4 6292
organelle assembly 1.6017E-6 9 69 4 6292
ribonucleoprotein complex assembly 5.1011E-6 9 92 4 6292
cellular component biogenesis 5.6926E-6 9 694 7 6292
ribosomal large subunit assembly 2.0999E-5 9 41 3 6292
ribosomal subunit assembly 5.1163E-5 9 55 3 6292
cellular macromolecular complex assembly 7.6181E-5 9 182 4 6292
ribosomal large subunit biogenesis 8.4573E-5 9 65 3 6292
cellular macromolecular complex subunit organization 3.0012E-4 9 259 4 6292
macromolecular complex assembly 4.1064E-4 9 281 4 6292
rRNA metabolic process 7.7062E-4 9 137 3 6292
macromolecular complex subunit organization 1.0223E-3 9 357 4 6292
cellular component assembly 1.359E-3 9 385 4 6292
ncRNA metabolic process 4.7107E-3 9 257 3 6292
regulation of transcription, mating-type specific 7.1338E-3 9 5 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

5S rRNA binding 1.819E-6 9 2 2 6292
RNA binding 2.7355E-6 9 367 6 6292
nucleic acid binding 8.7297E-5 9 666 6 6292
rRNA binding 2.1602E-4 9 16 2 6292
binding 3.7284E-4 9 1294 7 6292
7S RNA binding 1.4304E-3 9 1 1 6292
rRNA primary transcript binding 7.1338E-3 9 5 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle