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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 8 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nucleolus 1.4046E-12 8 211 8 6292
nuclear lumen 6.8142E-10 8 453 8 6292
organelle lumen 1.4108E-8 8 660 8 6292
intracellular organelle lumen 1.4108E-8 8 660 8 6292
membrane-enclosed lumen 2.2645E-8 8 700 8 6292
non-membrane-bounded organelle 2.8409E-7 8 959 8 6292
intracellular non-membrane-bounded organelle 2.8409E-7 8 959 8 6292
nuclear part 8.7333E-7 8 1103 8 6292
nucleus 1.2145E-4 8 2041 8 6292
intracellular organelle part 2.9704E-4 8 2282 8 6292
organelle part 2.9704E-4 8 2282 8 6292
Noc2p-Noc3p complex 2.5415E-3 8 2 1 6292
Noc1p-Noc2p complex 2.5415E-3 8 2 1 6292
Noc complex 6.3431E-3 8 5 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosome biogenesis 7.7416E-11 8 346 8 6292
ribonucleoprotein complex biogenesis 1.4517E-10 8 374 8 6292
cellular component biogenesis 2.1131E-8 8 694 8 6292
rRNA processing 1.7189E-7 8 128 5 6292
rRNA metabolic process 2.4182E-7 8 137 5 6292
ribosomal large subunit biogenesis 7.0413E-7 8 65 4 6292
ncRNA processing 2.291E-6 8 215 5 6292
ncRNA metabolic process 5.5383E-6 8 257 5 6292
RNA processing 3.7674E-5 8 380 5 6292
ribosome assembly 5.4212E-5 8 64 3 6292
organelle assembly 6.797E-5 8 69 3 6292
ribonucleoprotein complex assembly 1.6068E-4 8 92 3 6292
RNA metabolic process 2.5461E-4 8 954 6 6292
ribosomal large subunit assembly 1.1316E-3 8 41 2 6292
cellular macromolecular complex assembly 1.1976E-3 8 182 3 6292
gene expression 1.3613E-3 8 1283 6 6292
ribosomal subunit assembly 2.0312E-3 8 55 2 6292
maturation of SSU-rRNA 2.3343E-3 8 59 2 6292
nucleic acid metabolic process 2.3473E-3 8 1415 6 6292
cellular macromolecular complex subunit organization 3.31E-3 8 259 3 6292
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 4.1016E-3 8 1566 6 6292
macromolecular complex assembly 4.1746E-3 8 281 3 6292
regulation of transcription, mating-type specific 6.3431E-3 8 5 1 6292
cell proliferation 6.3431E-3 8 5 1 6292
snoRNA 3'-end processing 6.3431E-3 8 5 1 6292
cellular nitrogen compound metabolic process 7.9712E-3 8 1770 6 6292
macromolecular complex subunit organization 8.1895E-3 8 357 3 6292
nitrogen compound metabolic process 8.4927E-3 8 1791 6 6292
snoRNA processing 8.8705E-3 8 7 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle