YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 7 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

small nucleolar ribonucleoprotein complex 5.3771E-7 7 72 4 6292
nucleolus 8.0465E-7 7 211 5 6292
nuclear lumen 3.5214E-5 7 453 5 6292
ribonucleoprotein complex 6.5267E-5 7 514 5 6292
non-membrane-bounded organelle 7.5345E-5 7 959 6 6292
intracellular non-membrane-bounded organelle 7.5345E-5 7 959 6 6292
nuclear outer membrane 8.2954E-5 7 86 3 6292
nuclear membrane 1.1888E-4 7 97 3 6292
organelle lumen 2.1944E-4 7 660 5 6292
intracellular organelle lumen 2.1944E-4 7 660 5 6292
membrane-enclosed lumen 2.9135E-4 7 700 5 6292
outer membrane 7.1655E-4 7 178 3 6292
organelle outer membrane 7.1655E-4 7 178 3 6292
nuclear envelope 9.9288E-4 7 199 3 6292
nuclear membrane-endoplasmic reticulum network 1.5515E-3 7 232 3 6292
box C/D snoRNP complex 2.224E-3 7 2 1 6292
nuclear part 2.5214E-3 7 1103 5 6292
nucleus 5.8629E-3 7 2041 6 6292
endomembrane system 7.2588E-3 7 398 3 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

rRNA metabolic process 6.572E-10 7 137 6 6292
maturation of SSU-rRNA 1.2631E-9 7 59 5 6292
ncRNA metabolic process 2.9672E-8 7 257 6 6292
rRNA processing 6.5525E-8 7 128 5 6292
ribosome biogenesis 1.7714E-7 7 346 6 6292
ribonucleoprotein complex biogenesis 2.8234E-7 7 374 6 6292
ncRNA processing 8.837E-7 7 215 5 6292
cellular component biogenesis 1.1204E-5 7 694 6 6292
RNA processing 1.4865E-5 7 380 5 6292
RNA metabolic process 7.3069E-5 7 954 6 6292
rRNA modification 1.6097E-4 7 18 2 6292
nucleic acid metabolic process 7.2556E-4 7 1415 6 6292
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 1.3005E-3 7 1566 6 6292
RNA modification 2.4716E-3 7 70 2 6292
cellular nitrogen compound metabolic process 2.6186E-3 7 1770 6 6292
nitrogen compound metabolic process 2.8003E-3 7 1791 6 6292
gene expression 5.0816E-3 7 1283 5 6292
snoRNA 3'-end processing 5.552E-3 7 5 1 6292
snoRNA processing 7.7654E-3 7 7 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

snoRNA binding 4.8586E-4 7 31 2 6292
RNA binding 5.7756E-3 7 367 3 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle