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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 7 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nucleolus 8.0465E-7 7 211 5 6292
non-membrane-bounded organelle 1.8755E-6 7 959 7 6292
intracellular non-membrane-bounded organelle 1.8755E-6 7 959 7 6292
nuclear lumen 3.5214E-5 7 453 5 6292
nuclear outer membrane 8.2954E-5 7 86 3 6292
nuclear membrane 1.1888E-4 7 97 3 6292
organelle lumen 2.1944E-4 7 660 5 6292
intracellular organelle lumen 2.1944E-4 7 660 5 6292
membrane-enclosed lumen 2.9135E-4 7 700 5 6292
outer membrane 7.1655E-4 7 178 3 6292
organelle outer membrane 7.1655E-4 7 178 3 6292
nuclear envelope 9.9288E-4 7 199 3 6292
ribonucleoprotein complex 1.2617E-3 7 514 4 6292
nuclear membrane-endoplasmic reticulum network 1.5515E-3 7 232 3 6292
box C/D snoRNP complex 2.224E-3 7 2 1 6292
nuclear part 2.5214E-3 7 1103 5 6292
small nucleolar ribonucleoprotein complex 2.6131E-3 7 72 2 6292
nucleus 5.8629E-3 7 2041 6 6292
endomembrane system 7.2588E-3 7 398 3 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosome biogenesis 1.4353E-9 7 346 7 6292
ribonucleoprotein complex biogenesis 2.486E-9 7 374 7 6292
cellular component biogenesis 1.9331E-7 7 694 7 6292
maturation of SSU-rRNA 2.3907E-7 7 59 4 6292
rRNA processing 5.4565E-6 7 128 4 6292
rRNA metabolic process 7.1582E-6 7 137 4 6292
ncRNA processing 4.2803E-5 7 215 4 6292
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 8.2282E-5 7 13 2 6292
ncRNA metabolic process 8.6358E-5 7 257 4 6292
RNA processing 3.9614E-4 7 380 4 6292
ribosomal subunit assembly 1.532E-3 7 55 2 6292
ribosome assembly 2.0698E-3 7 64 2 6292
organelle assembly 2.4022E-3 7 69 2 6292
ribonucleoprotein complex assembly 4.2342E-3 7 92 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

rRNA binding 1.2639E-4 7 16 2 6292
7S RNA binding 1.1125E-3 7 1 1 6292
5S rRNA binding 2.224E-3 7 2 1 6292
RNA binding 5.7756E-3 7 367 3 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle