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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 7 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

90S preribosome 1.2705E-9 7 17 4 6292
ribonucleoprotein complex 2.338E-8 7 514 7 6292
preribosome 2.4595E-8 7 34 4 6292
cytosolic small ribosomal subunit 6.9973E-6 7 38 3 6292
small nucleolar ribonucleoprotein complex 4.8669E-5 7 72 3 6292
small ribosomal subunit 5.0731E-5 7 73 3 6292
non-membrane-bounded organelle 7.5345E-5 7 959 6 6292
intracellular non-membrane-bounded organelle 7.5345E-5 7 959 6 6292
macromolecular complex 7.9244E-5 7 1635 7 6292
cytosolic ribosome 1.3411E-4 7 101 3 6292
ribosome 1.3857E-4 7 290 4 6292
cytosolic part 2.352E-4 7 122 3 6292
ribosomal subunit 7.7712E-4 7 183 3 6292
nucleolar part 1.0268E-3 7 45 2 6292
box C/D snoRNP complex 2.224E-3 7 2 1 6292
Noc4p-Nop14p complex 2.224E-3 7 2 1 6292
cytosol 2.7813E-3 7 284 3 6292
nuclear outer membrane 3.7089E-3 7 86 2 6292
nuclear membrane 4.6971E-3 7 97 2 6292
Noc complex 5.552E-3 7 5 1 6292
preribosome, small subunit precursor 6.6592E-3 7 6 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

maturation of SSU-rRNA 1.2631E-9 7 59 5 6292
rRNA processing 6.5525E-8 7 128 5 6292
rRNA metabolic process 9.2297E-8 7 137 5 6292
ncRNA processing 8.837E-7 7 215 5 6292
ncRNA metabolic process 2.1485E-6 7 257 5 6292
ribosome biogenesis 9.3668E-6 7 346 5 6292
ribonucleoprotein complex biogenesis 1.3745E-5 7 374 5 6292
gene expression 1.4468E-5 7 1283 7 6292
RNA processing 1.4865E-5 7 380 5 6292
regulation of translation 2.405E-5 7 57 3 6292
posttranscriptional regulation of gene expression 2.9525E-5 7 61 3 6292
regulation of cellular protein metabolic process 4.0976E-5 7 68 3 6292
regulation of protein metabolic process 5.2849E-5 7 74 3 6292
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 8.2282E-5 7 13 2 6292
cellular component biogenesis 2.7953E-4 7 694 5 6292
ribosomal small subunit biogenesis 3.4048E-4 7 26 2 6292
translation 3.8026E-4 7 376 4 6292
cellular macromolecule metabolic process 8.282E-4 7 2285 7 6292
macromolecule metabolic process 1.0051E-3 7 2349 7 6292
RNA metabolic process 1.2754E-3 7 954 5 6292
primary metabolic process 4.3588E-3 7 2896 7 6292
cellular metabolic process 6.026E-3 7 3033 7 6292
nucleic acid metabolic process 7.9545E-3 7 1415 5 6292
metabolic process 7.9792E-3 7 3157 7 6292
regulation of gene expression 9.92E-3 7 445 3 6292
regulation of translational fidelity 9.9746E-3 7 9 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

structural constituent of ribosome 4.0495E-5 7 212 4 6292
structural molecule activity 2.5455E-4 7 339 4 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle