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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 11 proteins

Complex Member Proteins

Protein

GO Cellular Component GO Biological Process GO Molecular Function
KRE33
  • nucleolus
  • ribosome biogenesis
  • molecular_function
  • RPL10
  • ribonucleoprotein complex
  • cytoplasm
  • cytosolic large ribosomal subunit
  • ribosome
  • intracellular
  • ribosomal large subunit assembly
  • translation
  • structural constituent of ribosome
  • RPL15A
  • ribonucleoprotein complex
  • cytoplasm
  • cytosolic large ribosomal subunit
  • ribosome
  • intracellular
  • translation
  • RNA binding
  • structural constituent of ribosome
  • RPL20B
  • ribosome biogenesis
  • translation
  • structural constituent of ribosome
  • RPS11A, RPS11B
  • ribonucleoprotein complex
  • cytosolic small ribosomal subunit
  • cytoplasm
  • ribosome
  • 90S preribosome
  • intracellular
  • regulation of translation
  • maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
  • ribosomal small subunit assembly
  • translation
  • RNA binding
  • structural constituent of ribosome
  • rRNA binding
  • RPS1A
  • ribonucleoprotein complex
  • cytoplasm
  • cytosolic small ribosomal subunit
  • ribosome
  • 90S preribosome
  • intracellular
  • translation
  • structural constituent of ribosome
  • RPS1B
  • ribonucleoprotein complex
  • cytoplasm
  • cytosolic small ribosomal subunit
  • ribosome
  • 90S preribosome
  • intracellular
  • translation
  • structural constituent of ribosome
  • RPS3
  • preribosome, small subunit precursor
  • response to DNA damage stimulus
  • translation
  • structural constituent of ribosome
  • RPS6A, RPS6B
  • small-subunit processome
  • nucleus
  • ribonucleoprotein complex
  • cytoplasm
  • cytosolic small ribosomal subunit
  • ribosome
  • nucleolus
  • 90S preribosome
  • intracellular
  • maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
  • ribosome biogenesis
  • rRNA processing
  • translation
  • structural constituent of ribosome
  • RPS7A
  • small nucleolar ribonucleoprotein complex
  • translation
  • structural constituent of ribosome
  • RPS8B, RPS8A
  • ribonucleoprotein complex
  • cytosolic small ribosomal subunit
  • cytoplasm
  • 90S preribosome
  • ribosome
  • intracellular
  • regulation of translation
  • maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
  • translation
  • structural constituent of ribosome
  • Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    preribosome 7.0903E-12 11 34 6 6292
    90S preribosome 3.4512E-11 11 17 5 6292
    cytosolic ribosome 6.9745E-11 11 101 7 6292
    cytosolic part 2.6842E-10 11 122 7 6292
    cytosolic small ribosomal subunit 2.753E-9 11 38 5 6292
    ribosomal subunit 4.6998E-9 11 183 7 6292
    ribonucleoprotein complex 7.1884E-9 11 514 9 6292
    small ribosomal subunit 8.0106E-8 11 73 5 6292
    cytosol 1.0024E-7 11 284 7 6292
    ribosome 1.1582E-7 11 290 7 6292
    non-membrane-bounded organelle 3.0414E-5 11 959 8 6292
    intracellular non-membrane-bounded organelle 3.0414E-5 11 959 8 6292
    macromolecular complex 1.7215E-4 11 1635 9 6292
    cytosolic large ribosomal subunit 4.6539E-3 11 60 2 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    translation 5.4005E-12 11 376 10 6292
    cellular protein metabolic process 1.8871E-7 11 1074 10 6292
    protein metabolic process 3.2802E-7 11 1136 10 6292
    cellular macromolecule biosynthetic process 5.0526E-7 11 1187 10 6292
    macromolecule biosynthetic process 5.137E-7 11 1189 10 6292
    gene expression 1.0844E-6 11 1283 10 6292
    maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.1264E-6 11 13 3 6292
    cellular biosynthetic process 7.6547E-6 11 1567 10 6292
    biosynthetic process 9.4905E-6 11 1602 10 6292
    ribosome biogenesis 9.6734E-6 11 346 6 6292
    ribonucleoprotein complex biogenesis 1.5174E-5 11 374 6 6292
    maturation of SSU-rRNA 1.2253E-4 11 59 3 6292
    cellular macromolecule metabolic process 2.9073E-4 11 2285 10 6292
    macromolecule metabolic process 3.7814E-4 11 2349 10 6292
    cellular component biogenesis 4.9969E-4 11 694 6 6292
    rRNA processing 1.2042E-3 11 128 3 6292
    rRNA metabolic process 1.466E-3 11 137 3 6292
    primary metabolic process 2.7104E-3 11 2896 10 6292
    ribosomal subunit assembly 3.9232E-3 11 55 2 6292
    cellular metabolic process 4.1594E-3 11 3033 10 6292
    regulation of translation 4.2084E-3 11 57 2 6292
    posttranscriptional regulation of gene expression 4.8071E-3 11 61 2 6292
    ribosome assembly 5.2805E-3 11 64 2 6292
    ncRNA processing 5.2979E-3 11 215 3 6292
    regulation of cellular protein metabolic process 5.9441E-3 11 68 2 6292
    metabolic process 6.0149E-3 11 3157 10 6292
    organelle assembly 6.1157E-3 11 69 2 6292
    regulation of protein metabolic process 7.0076E-3 11 74 2 6292
    ncRNA metabolic process 8.7081E-3 11 257 3 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    structural constituent of ribosome 1.6349E-14 11 212 10 6292
    structural molecule activity 1.9021E-12 11 339 10 6292

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle