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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 7 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

cytosolic ribosome 1.9761E-8 7 101 5 6292
cytosolic part 5.1422E-8 7 122 5 6292
ribosomal subunit 3.9497E-7 7 183 5 6292
ribonucleoprotein complex 1.8849E-6 7 514 6 6292
cytosol 3.5275E-6 7 284 5 6292
ribosome 3.9127E-6 7 290 5 6292
cytosolic small ribosomal subunit 6.9973E-6 7 38 3 6292
small ribosomal subunit 5.0731E-5 7 73 3 6292
non-membrane-bounded organelle 7.5345E-5 7 959 6 6292
intracellular non-membrane-bounded organelle 7.5345E-5 7 959 6 6292
90S preribosome 1.4316E-4 7 17 2 6292
preribosome 5.8524E-4 7 34 2 6292
macromolecular complex 1.6651E-3 7 1635 6 6292
cytosolic large ribosomal subunit 1.8211E-3 7 60 2 6292
large ribosomal subunit 6.0062E-3 7 110 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.4008E-7 7 13 3 6292
translation 2.915E-7 7 376 6 6292
gene expression 1.4468E-5 7 1283 7 6292
maturation of SSU-rRNA 2.6695E-5 7 59 3 6292
cellular protein metabolic process 1.4622E-4 7 1074 6 6292
protein metabolic process 2.0289E-4 7 1136 6 6292
cellular macromolecule biosynthetic process 2.6203E-4 7 1187 6 6292
macromolecule biosynthetic process 2.6461E-4 7 1189 6 6292
rRNA processing 2.7117E-4 7 128 3 6292
ribosome biogenesis 2.7556E-4 7 346 4 6292
rRNA metabolic process 3.3156E-4 7 137 3 6292
ribonucleoprotein complex biogenesis 3.725E-4 7 374 4 6292
cellular macromolecule metabolic process 8.282E-4 7 2285 7 6292
macromolecule metabolic process 1.0051E-3 7 2349 7 6292
ncRNA processing 1.2438E-3 7 215 3 6292
cellular biosynthetic process 1.3053E-3 7 1567 6 6292
biosynthetic process 1.4816E-3 7 1602 6 6292
regulation of translation 1.6447E-3 7 57 2 6292
posttranscriptional regulation of gene expression 1.8819E-3 7 61 2 6292
ncRNA metabolic process 2.0862E-3 7 257 3 6292
regulation of cellular protein metabolic process 2.3339E-3 7 68 2 6292
regulation of protein metabolic process 2.7584E-3 7 74 2 6292
cellular component biogenesis 3.9065E-3 7 694 4 6292
primary metabolic process 4.3588E-3 7 2896 7 6292
cellular metabolic process 6.026E-3 7 3033 7 6292
RNA processing 6.3721E-3 7 380 3 6292
metabolic process 7.9792E-3 7 3157 7 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

structural constituent of ribosome 9.2906E-9 7 212 6 6292
structural molecule activity 1.5671E-7 7 339 6 6292
RNA binding 5.7756E-3 7 367 3 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle