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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 6 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nucleolus 2.3635E-7 6 211 5 6292
nuclear lumen 1.0695E-5 6 453 5 6292
organelle lumen 6.864E-5 6 660 5 6292
intracellular organelle lumen 6.864E-5 6 660 5 6292
membrane-enclosed lumen 9.1664E-5 6 700 5 6292
non-membrane-bounded organelle 4.2731E-4 6 959 5 6292
intracellular non-membrane-bounded organelle 4.2731E-4 6 959 5 6292
nuclear part 8.4241E-4 6 1103 5 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosome biogenesis 2.8028E-6 6 346 5 6292
ribonucleoprotein complex biogenesis 4.1287E-6 6 374 5 6292
cellular component biogenesis 8.7868E-5 6 694 5 6292
rRNA metabolic process 1.9253E-4 6 137 3 6292
ribosomal large subunit assembly 6.1127E-4 6 41 2 6292
ribosomal subunit assembly 1.1004E-3 6 55 2 6292
ncRNA metabolic process 1.2291E-3 6 257 3 6292
ribosome assembly 1.4882E-3 6 64 2 6292
ribosomal large subunit biogenesis 1.5348E-3 6 65 2 6292
organelle assembly 1.7281E-3 6 69 2 6292
ribonucleoprotein complex assembly 3.0534E-3 6 92 2 6292
rRNA processing 5.8384E-3 6 128 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

rRNA binding 9.041E-5 6 16 2 6292
RNA binding 1.5555E-4 6 367 4 6292
7S RNA binding 9.5359E-4 6 1 1 6292
nucleic acid binding 1.5669E-3 6 666 4 6292
5S rRNA binding 1.9064E-3 6 2 1 6292
rRNA primary transcript binding 4.7604E-3 6 5 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle