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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 7 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

non-membrane-bounded organelle 7.5345E-5 7 959 6 6292
intracellular non-membrane-bounded organelle 7.5345E-5 7 959 6 6292
90S preribosome 1.4316E-4 7 17 2 6292
preribosome 5.8524E-4 7 34 2 6292
cytosolic small ribosomal subunit 7.3181E-4 7 38 2 6292
nucleolus 1.1777E-3 7 211 3 6292
ribonucleoprotein complex 1.2617E-3 7 514 4 6292
box C/D snoRNP complex 2.224E-3 7 2 1 6292
small ribosomal subunit 2.6853E-3 7 73 2 6292
ribosome 2.9533E-3 7 290 3 6292
nuclear outer membrane 3.7089E-3 7 86 2 6292
nuclear membrane 4.6971E-3 7 97 2 6292
cytosolic ribosome 5.0837E-3 7 101 2 6292
cytosolic part 7.3476E-3 7 122 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosome biogenesis 1.4353E-9 7 346 7 6292
ribonucleoprotein complex biogenesis 2.486E-9 7 374 7 6292
cellular component biogenesis 1.9331E-7 7 694 7 6292
maturation of SSU-rRNA 2.3907E-7 7 59 4 6292
rRNA processing 5.4565E-6 7 128 4 6292
rRNA metabolic process 7.1582E-6 7 137 4 6292
ncRNA processing 4.2803E-5 7 215 4 6292
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 8.2282E-5 7 13 2 6292
ncRNA metabolic process 8.6358E-5 7 257 4 6292
RNA processing 3.9614E-4 7 380 4 6292
ribosomal subunit assembly 1.532E-3 7 55 2 6292
regulation of translation 1.6447E-3 7 57 2 6292
posttranscriptional regulation of gene expression 1.8819E-3 7 61 2 6292
ribosome assembly 2.0698E-3 7 64 2 6292
regulation of cellular protein metabolic process 2.3339E-3 7 68 2 6292
organelle assembly 2.4022E-3 7 69 2 6292
regulation of protein metabolic process 2.7584E-3 7 74 2 6292
ribonucleoprotein complex assembly 4.2342E-3 7 92 2 6292
gene expression 5.0816E-3 7 1283 5 6292
translation 6.1847E-3 7 376 3 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

structural constituent of ribosome 1.194E-3 7 212 3 6292
structural molecule activity 4.6122E-3 7 339 3 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle