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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 8 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nucleolus 3.3636E-10 8 211 7 6292
nuclear lumen 7.205E-8 8 453 7 6292
organelle lumen 9.8757E-7 8 660 7 6292
intracellular organelle lumen 9.8757E-7 8 660 7 6292
Noc1p-Noc2p complex 1.4147E-6 8 2 2 6292
membrane-enclosed lumen 1.4845E-6 8 700 7 6292
non-membrane-bounded organelle 1.3016E-5 8 959 7 6292
intracellular non-membrane-bounded organelle 1.3016E-5 8 959 7 6292
Noc complex 1.4121E-5 8 5 2 6292
nuclear part 3.3951E-5 8 1103 7 6292
preribosome, large subunit precursor 5.0705E-5 8 9 2 6292
90S preribosome 1.9058E-4 8 17 2 6292
preribosome 7.7767E-4 8 34 2 6292
nucleolar part 1.3628E-3 8 45 2 6292
nucleus 2.1521E-3 8 2041 7 6292
ribonucleoprotein complex 2.361E-3 8 514 4 6292
Noc2p-Noc3p complex 2.5415E-3 8 2 1 6292
small nucleolar ribonucleoprotein complex 3.4584E-3 8 72 2 6292
intracellular organelle part 4.4856E-3 8 2282 7 6292
organelle part 4.4856E-3 8 2282 7 6292
nuclear outer membrane 4.9014E-3 8 86 2 6292
nuclear membrane 6.2001E-3 8 97 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosome assembly 5.0828E-9 8 64 5 6292
organelle assembly 7.477E-9 8 69 5 6292
ribosome biogenesis 1.094E-8 8 346 7 6292
ribonucleoprotein complex biogenesis 1.8872E-8 8 374 7 6292
ribonucleoprotein complex assembly 3.2417E-8 8 92 5 6292
ribosomal large subunit assembly 1.0662E-7 8 41 4 6292
ribosomal subunit assembly 3.5652E-7 8 55 4 6292
ribosomal large subunit biogenesis 7.0413E-7 8 65 4 6292
cellular macromolecular complex assembly 1.0007E-6 8 182 5 6292
cellular component biogenesis 1.3986E-6 8 694 7 6292
cellular macromolecular complex subunit organization 5.7542E-6 8 259 5 6292
macromolecular complex assembly 8.5984E-6 8 281 5 6292
macromolecular complex subunit organization 2.779E-5 8 357 5 6292
cellular component assembly 4.0149E-5 8 385 5 6292
rRNA metabolic process 5.2205E-4 8 137 3 6292
maturation of SSU-rRNA 2.3343E-3 8 59 2 6292
ncRNA metabolic process 3.2376E-3 8 257 3 6292
organelle organization 6.3392E-3 8 1127 5 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

rRNA binding 7.4989E-7 8 16 3 6292
RNA binding 9.5895E-7 8 367 6 6292
5S rRNA binding 1.4147E-6 8 2 2 6292
rRNA primary transcript binding 1.4121E-5 8 5 2 6292
nucleic acid binding 3.1964E-5 8 666 6 6292
snoRNA binding 6.4583E-4 8 31 2 6292
7S RNA binding 1.2715E-3 8 1 1 6292
binding 1.4278E-3 8 1294 6 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle