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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 7 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nucleolus 8.0465E-7 7 211 5 6292
nuclear lumen 3.5214E-5 7 453 5 6292
non-membrane-bounded organelle 7.5345E-5 7 959 6 6292
intracellular non-membrane-bounded organelle 7.5345E-5 7 959 6 6292
organelle lumen 2.1944E-4 7 660 5 6292
intracellular organelle lumen 2.1944E-4 7 660 5 6292
membrane-enclosed lumen 2.9135E-4 7 700 5 6292
box C/D snoRNP complex 2.224E-3 7 2 1 6292
nuclear part 2.5214E-3 7 1103 5 6292
small nucleolar ribonucleoprotein complex 2.6131E-3 7 72 2 6292
nuclear outer membrane 3.7089E-3 7 86 2 6292
nuclear membrane 4.6971E-3 7 97 2 6292
nucleus 5.8629E-3 7 2041 6 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosome biogenesis 1.7714E-7 7 346 6 6292
ribonucleoprotein complex biogenesis 2.8234E-7 7 374 6 6292
rRNA metabolic process 7.1582E-6 7 137 4 6292
ribosomal large subunit assembly 8.8294E-6 7 41 3 6292
cellular component biogenesis 1.1204E-5 7 694 6 6292
ribosomal subunit assembly 2.1584E-5 7 55 3 6292
maturation of SSU-rRNA 2.6695E-5 7 59 3 6292
ribosome assembly 3.4131E-5 7 64 3 6292
ribosomal large subunit biogenesis 3.5765E-5 7 65 3 6292
organelle assembly 4.2818E-5 7 69 3 6292
ncRNA metabolic process 8.6358E-5 7 257 4 6292
ribonucleoprotein complex assembly 1.015E-4 7 92 3 6292
rRNA processing 2.7117E-4 7 128 3 6292
cellular macromolecular complex assembly 7.6476E-4 7 182 3 6292
ncRNA processing 1.2438E-3 7 215 3 6292
cellular macromolecular complex subunit organization 2.1334E-3 7 259 3 6292
macromolecular complex assembly 2.6978E-3 7 281 3 6292
macromolecular complex subunit organization 5.3413E-3 7 357 3 6292
RNA processing 6.3721E-3 7 380 3 6292
cellular component assembly 6.6113E-3 7 385 3 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

5S rRNA binding 1.0611E-6 7 2 2 6292
RNA binding 1.2524E-5 7 367 5 6292
rRNA binding 1.2639E-4 7 16 2 6292
nucleic acid binding 2.2923E-4 7 666 5 6292
7S RNA binding 1.1125E-3 7 1 1 6292
binding 5.2851E-3 7 1294 5 6292
rRNA primary transcript binding 5.552E-3 7 5 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle