From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.085] [SVM Score: 0.447226957373] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
ALG2 |
|
|
|
PMT1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
endoplasmic reticulum | 3.3381E-3 | 2 | 364 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
protein amino acid glycosylation | 1.4021E-4 | 2 | 75 | 2 | 6292 |
glycosylation | 1.4021E-4 | 2 | 75 | 2 | 6292 |
macromolecule glycosylation | 1.4021E-4 | 2 | 75 | 2 | 6292 |
glycoprotein biosynthetic process | 1.6371E-4 | 2 | 81 | 2 | 6292 |
glycoprotein metabolic process | 1.7194E-4 | 2 | 83 | 2 | 6292 |
oligosaccharide-lipid intermediate assembly | 9.5344E-4 | 2 | 3 | 1 | 6292 |
cellular oligosaccharide metabolic process | 9.5344E-4 | 2 | 3 | 1 | 6292 |
cellular carbohydrate metabolic process | 1.7276E-3 | 2 | 262 | 2 | 6292 |
carbohydrate metabolic process | 1.9877E-3 | 2 | 281 | 2 | 6292 |
dolichol-linked oligosaccharide biosynthetic process | 3.1764E-3 | 2 | 10 | 1 | 6292 |
oligosaccharide biosynthetic process | 5.0798E-3 | 2 | 16 | 1 | 6292 |
protein amino acid O-linked glycosylation | 5.3968E-3 | 2 | 17 | 1 | 6292 |
protein modification process | 6.278E-3 | 2 | 499 | 2 | 6292 |
macromolecule modification | 8.1649E-3 | 2 | 569 | 2 | 6292 |
oligosaccharide metabolic process | 8.8811E-3 | 2 | 28 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
mannosyltransferase activity | 4.5626E-5 | 2 | 43 | 2 | 6292 |
transferase activity, transferring hexosyl groups | 1.5966E-4 | 2 | 80 | 2 | 6292 |
transferase activity, transferring glycosyl groups | 2.7062E-4 | 2 | 104 | 2 | 6292 |
glycolipid mannosyltransferase activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
dolichyl-phosphate-mannose-protein mannosyltransferase activity | 2.224E-3 | 2 | 7 | 1 | 6292 |