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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.473917179196]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nuclear telomeric heterochromatin 2.224E-3 2 7 1 6292
telomeric heterochromatin 2.224E-3 2 7 1 6292
nuclear heterochromatin 2.224E-3 2 7 1 6292
heterochromatin 2.224E-3 2 7 1 6292
telomere cap complex 3.4937E-3 2 11 1 6292
nuclear telomere cap complex 3.4937E-3 2 11 1 6292
nuclear chromosome, telomeric region 7.2981E-3 2 23 1 6292
chromosome, telomeric region 8.5646E-3 2 27 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

telomere maintenance in response to DNA damage 3.1786E-4 2 1 1 6292
protection from non-homologous end joining at telomere 3.1786E-4 2 1 1 6292
telomere capping 1.5888E-3 2 5 1 6292
transcription from RNA polymerase II promoter 2.8267E-3 2 335 2 6292
telomere maintenance via telomere lengthening 4.1283E-3 2 13 1 6292
telomere maintenance via telomerase 4.1283E-3 2 13 1 6292
RNA-dependent DNA replication 4.1283E-3 2 13 1 6292
transcription, DNA-dependent 6.3792E-3 2 503 2 6292
RNA biosynthetic process 6.5067E-3 2 508 2 6292
transcription 7.6839E-3 2 552 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

transcription factor activity 9.8679E-5 2 63 2 6292
DNA binding 1.6492E-3 2 256 2 6292
transcription regulator activity 2.8947E-3 2 339 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle