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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.478060054731]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

iron ion transport 7.7306E-6 2 18 2 6292
di-, tri-valent inorganic cation transport 2.5061E-5 2 32 2 6292
transition metal ion transport 4.5626E-5 2 43 2 6292
metal ion transport 8.3521E-5 2 58 2 6292
cation transport 2.256E-4 2 95 2 6292
enterobactin transport 3.1786E-4 2 1 1 6292
ferric-enterobactin transport 3.1786E-4 2 1 1 6292
ferric iron transport 3.1786E-4 2 1 1 6292
ion transport 3.6076E-4 2 120 2 6292
response to copper ion 1.2712E-3 2 4 1 6292
high-affinity iron ion transport 1.2712E-3 2 4 1 6292
iron ion transmembrane transport 1.5888E-3 2 5 1 6292
siderophore-iron transport 1.9064E-3 2 6 1 6292
iron assimilation by chelation and transport 1.9064E-3 2 6 1 6292
iron assimilation 1.9064E-3 2 6 1 6292
iron chelate transport 1.9064E-3 2 6 1 6292
siderophore transport 2.859E-3 2 9 1 6292
response to metal ion 5.7138E-3 2 18 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

iron ion transmembrane transporter activity 3.3348E-6 2 12 2 6292
transition metal ion transmembrane transporter activity 1.9099E-5 2 28 2 6292
di-, tri-valent inorganic cation transmembrane transporter activity 3.0063E-5 2 35 2 6292
metal ion transmembrane transporter activity 5.2295E-5 2 46 2 6292
inorganic cation transmembrane transporter activity 2.5516E-4 2 101 2 6292
ferric-enterobactin transmembrane transporter activity 3.1786E-4 2 1 1 6292
cation transmembrane transporter activity 3.4879E-4 2 118 2 6292
ion transmembrane transporter activity 5.3483E-4 2 146 2 6292
oxidoreductase activity, oxidizing metal ions, oxygen as acceptor 6.3568E-4 2 2 1 6292
ferroxidase activity 6.3568E-4 2 2 1 6292
siderophore-iron transmembrane transporter activity 1.2712E-3 2 4 1 6292
siderophore transporter activity 1.2712E-3 2 4 1 6292
substrate-specific transmembrane transporter activity 1.7943E-3 2 267 2 6292
transmembrane transporter activity 2.3578E-3 2 306 2 6292
substrate-specific transporter activity 2.8436E-3 2 336 2 6292
oxidoreductase activity, oxidizing metal ions 3.811E-3 2 12 1 6292
transporter activity 4.1132E-3 2 404 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle