YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.487644381996]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

DNA-directed RNA polymerase II, holoenzyme 7.7811E-5 2 56 2 6292
transcription factor complex 1.2556E-4 2 71 2 6292
nucleoplasm part 1.5102E-3 2 245 2 6292
nucleoplasm 1.7541E-3 2 264 2 6292
nucleotide-excision repair factor 3 complex 2.224E-3 2 7 1 6292
holo TFIIH complex 3.1764E-3 2 10 1 6292
transcription factor TFIID complex 4.7627E-3 2 15 1 6292
nuclear lumen 5.1728E-3 2 453 2 6292
nucleotide-excision repair complex 6.6645E-3 2 21 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

transcription initiation from RNA polymerase II promoter 5.4619E-5 2 47 2 6292
transcription initiation 8.3521E-5 2 58 2 6292
protein complex biogenesis 6.0304E-4 2 155 2 6292
protein complex assembly 6.0304E-4 2 155 2 6292
regulation of transcription from RNA polymerase II promoter 1.3075E-3 2 228 2 6292
nucleotide-excision repair, DNA duplex unwinding 1.9064E-3 2 6 1 6292
macromolecular complex assembly 1.9877E-3 2 281 2 6292
regulation of transcription from RNA polymerase II promoter, mitotic 2.5415E-3 2 8 1 6292
negative regulation of transcription from RNA polymerase II promoter, mitotic 2.5415E-3 2 8 1 6292
transcription from RNA polymerase II promoter 2.8267E-3 2 335 2 6292
regulation of transcription, mitotic 2.859E-3 2 9 1 6292
negative regulation of transcription, mitotic 2.859E-3 2 9 1 6292
macromolecular complex subunit organization 3.2108E-3 2 357 2 6292
regulation of transcription, DNA-dependent 3.2288E-3 2 358 2 6292
regulation of RNA metabolic process 3.3198E-3 2 363 2 6292
regulation of transcription 3.7155E-3 2 384 2 6292
cellular component assembly 3.7349E-3 2 385 2 6292
regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 4.3405E-3 2 415 2 6292
regulation of nitrogen compound metabolic process 4.3615E-3 2 416 2 6292
regulation of transcription involved in G1 phase of mitotic cell cycle 4.4455E-3 2 14 1 6292
regulation of gene expression 4.9915E-3 2 445 2 6292
regulation of macromolecule biosynthetic process 5.2416E-3 2 456 2 6292
regulation of cellular biosynthetic process 5.6164E-3 2 472 2 6292
regulation of biosynthetic process 5.6402E-3 2 473 2 6292
regulation of macromolecule metabolic process 6.004E-3 2 488 2 6292
DNA geometric change 6.3477E-3 2 20 1 6292
DNA duplex unwinding 6.3477E-3 2 20 1 6292
transcription, DNA-dependent 6.3792E-3 2 503 2 6292
RNA biosynthetic process 6.5067E-3 2 508 2 6292
regulation of primary metabolic process 6.6615E-3 2 514 2 6292
regulation of cellular metabolic process 7.2445E-3 2 536 2 6292
regulation of metabolic process 7.5452E-3 2 547 2 6292
transcription 7.6839E-3 2 552 2 6292
G1 phase of mitotic cell cycle 8.5646E-3 2 27 1 6292
G1 phase 8.5646E-3 2 27 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

general RNA polymerase II transcription factor activity 1.0186E-4 2 64 2 6292
RNA polymerase II transcription factor activity 4.2367E-4 2 130 2 6292
transcription regulator activity 2.8947E-3 2 339 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle